Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   HT078_RS02150 Genome accession   NZ_AP023071
Coordinates   440754..441149 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435754..446149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS12075 - 440533..440652 (+) 120 Protein_398 competence protein ComE -
  HT078_RS02150 (TUM15748C_04030) comE 440754..441149 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  HT078_RS02155 (TUM15748C_04040) comP 441237..441686 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  HT078_RS02160 - 442063..442209 (-) 147 WP_003691757.1 hypothetical protein -
  HT078_RS02165 - 442596..443186 (+) 591 WP_080229150.1 DNA cytosine methyltransferase -
  HT078_RS02170 (TUM15748C_04050) - 443183..443554 (+) 372 WP_012503918.1 DNA cytosine methyltransferase -
  HT078_RS12080 (TUM15748C_04060) - 443568..444425 (+) 858 WP_012503917.1 ATP-binding protein -
  HT078_RS12085 (TUM15748C_04070) - 444615..445211 (+) 597 WP_012503916.1 TIGR02391 family protein -
  HT078_RS02180 (TUM15748C_04080) - 445217..445639 (+) 423 WP_003691751.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=81012 HT078_RS02150 WP_003703428.1 440754..441149(+) (comE) [Neisseria gonorrhoeae strain TUM15748]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=81012 HT078_RS02150 WP_003703428.1 440754..441149(+) (comE) [Neisseria gonorrhoeae strain TUM15748]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment