Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   P5655_RS05000 Genome accession   NZ_CP120681
Coordinates   858511..859086 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 853511..864086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS04970 (P5655_04970) dapD 853697..854407 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  P5655_RS04975 (P5655_04975) dapI 854477..855601 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  P5655_RS04980 (P5655_04980) ykuS 855663..855908 (+) 246 WP_003232382.1 YkuS family protein -
  P5655_RS04985 (P5655_04985) mscT 855945..856748 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  P5655_RS04990 (P5655_04990) ahpA 856985..857527 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  P5655_RS04995 (P5655_04995) ykuV 857599..858045 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  P5655_RS05000 (P5655_05000) rok 858511..859086 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  P5655_RS05005 (P5655_05005) cse15 859127..860092 (-) 966 WP_003245018.1 spore protein Cse15 -
  P5655_RS05010 (P5655_05010) mobA 860229..860828 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  P5655_RS05015 (P5655_05015) moeB 860879..861898 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  P5655_RS05020 (P5655_05020) glp 861916..863208 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  P5655_RS05025 (P5655_05025) mobB 863169..863690 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=807726 P5655_RS05000 WP_003232378.1 858511..859086(+) (rok) [Bacillus subtilis strain DSM 10]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=807726 P5655_RS05000 WP_003232378.1 858511..859086(+) (rok) [Bacillus subtilis strain DSM 10]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1