Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HXS58_RS02220 Genome accession   NZ_AP023036
Coordinates   439433..439717 (+) Length   94 a.a.
NCBI ID   WP_006563999.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-0020     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434433..444717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS58_RS02190 (NHP190020_04770) - 435050..436183 (+) 1134 WP_064429998.1 NAD(P)/FAD-dependent oxidoreductase -
  HXS58_RS09715 - 436411..436964 (-) 554 Protein_446 arginine decarboxylase -
  HXS58_RS02205 (NHP190020_04790) - 437382..437795 (-) 414 WP_034376478.1 hypothetical protein -
  HXS58_RS02210 (NHP190020_04800) - 438065..438844 (+) 780 WP_104705821.1 integrase -
  HXS58_RS02215 (NHP190020_04810) - 438957..439436 (+) 480 WP_176485228.1 hypothetical protein -
  HXS58_RS02220 (NHP190020_04820) comB2 439433..439717 (+) 285 WP_006563999.1 TrbC/VirB2 family protein Machinery gene
  HXS58_RS02225 (NHP190020_04830) comB3 439728..439991 (+) 264 WP_006564000.1 hypothetical protein Machinery gene
  HXS58_RS02230 (NHP190020_04840) - 440002..440238 (+) 237 WP_034375660.1 hypothetical protein -
  HXS58_RS02235 (NHP190020_04850) - 440238..442811 (+) 2574 WP_040499089.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HXS58_RS02240 - 442830..442964 (+) 135 WP_000738747.1 hypothetical protein -
  HXS58_RS02245 (NHP190020_04860) - 442957..444126 (+) 1170 WP_006565092.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10736.06 Da        Isoelectric Point: 11.1589

>NTDB_id=80749 HXS58_RS02220 WP_006563999.1 439433..439717(+) (comB2) [Helicobacter suis strain NHP19-0020]
MKKLRHFRKLIAFLGFSPPLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=80749 HXS58_RS02220 WP_006563999.1 439433..439717(+) (comB2) [Helicobacter suis strain NHP19-0020]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACCTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTCATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment