Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   POF60_RS01040 Genome accession   NZ_CP116705
Coordinates   164892..165941 (+) Length   349 a.a.
NCBI ID   WP_000410287.1    Uniprot ID   A0AB38VMS2
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 159892..170941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS01025 (POF60_01025) - 161150..162805 (+) 1656 WP_001118752.1 peptide ABC transporter substrate-binding protein -
  POF60_RS01030 (POF60_01030) - 162924..163838 (+) 915 WP_000598965.1 ABC transporter permease -
  POF60_RS01035 (POF60_01035) - 163848..164879 (+) 1032 WP_000764052.1 ABC transporter permease -
  POF60_RS01040 (POF60_01040) oppD 164892..165941 (+) 1050 WP_000410287.1 ABC transporter ATP-binding protein Regulator
  POF60_RS01045 (POF60_01045) amiF 165938..166870 (+) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38872.35 Da        Isoelectric Point: 4.7644

>NTDB_id=779136 POF60_RS01040 WP_000410287.1 164892..165941(+) (oppD) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKAQ

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=779136 POF60_RS01040 WP_000410287.1 164892..165941(+) (oppD) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGTATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATTCCAAATGCTGAAGAGCATATTAACGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATCGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCCAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.427

0.785
  amiE Streptococcus salivarius strain HSISS4

55.162

97.135

0.536
  amiE Streptococcus thermophilus LMG 18311

54.572

97.135

0.53
  amiE Streptococcus thermophilus LMD-9

54.572

97.135

0.53