NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	PHA78_RS00835	Genome accession	NZ_CP116604
Coordinates	141251..142204 (+)	Length	317 a.a.
NCBI ID	WP_272158325.1	Uniprot ID	-
Organism	Streptococcus sp. HN38
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 136251..147204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHA78_RS00795	-	136397..137347 (-)	951	WP_272158320.1	S66 peptidase family protein	-
PHA78_RS00800	comYA	137433..138383 (+)	951	WP_043026808.1	competence type IV pilus ATPase ComGA	Machinery gene
PHA78_RS00805	comYB	138295..139332 (+)	1038	WP_272158556.1	competence type IV pilus assembly protein ComGB	Machinery gene
PHA78_RS00810	comYC	139334..139615 (+)	282	WP_272158321.1	competence type IV pilus major pilin ComGC	Machinery gene
PHA78_RS00815	comGD	139596..140003 (+)	408	WP_272158322.1	competence type IV pilus minor pilin ComGD	-
PHA78_RS00820	comYE	139975..140268 (+)	294	WP_272158323.1	competence type IV pilus minor pilin ComGE	Machinery gene
PHA78_RS00825	comGF/cglF	140255..140689 (+)	435	WP_172115686.1	competence type IV pilus minor pilin ComGF	Machinery gene
PHA78_RS00830	comGG	140667..141194 (+)	528	WP_272158324.1	competence type IV pilus minor pilin ComGG	-
PHA78_RS00835	comYH	141251..142204 (+)	954	WP_272158325.1	class I SAM-dependent methyltransferase	Machinery gene
PHA78_RS00840	-	142254..143441 (+)	1188	WP_105202630.1	acetate kinase	-
PHA78_RS00845	-	143758..144309 (+)	552	WP_202105774.1	folate family ECF transporter S component	-
PHA78_RS00850	-	144363..145625 (+)	1263	WP_272158326.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 35814.93 Da Isoelectric Point: 4.4183

                                >NTDB_id=778748 PHA78_RS00835 WP_272158325.1 141251..142204(+) (comYH) [Streptococcus sp. HN38]

MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLIINNNKTLKQLDLTKEEWRRAYQFLLIKANQT

EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAE

ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASSNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ

SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQRKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide

Download Length: 954 bp

                                >NTDB_id=778748 PHA78_RS00835 WP_272158325.1 141251..142204(+) (comYH) [Streptococcus sp. HN38]

ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTACTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA

TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTATTATCAATAATAACA

AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCTTGCTCATCAAGGCCAATCAGACT

GAACCCATGCAGTACAATCACCAGTTCACACCTGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC

GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGTCAGAAAG

AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAG

ATTTCTTTTGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG

TTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTTGCCAGTTCAAATGAACATACCTACGCCCACCATTTGCTCA

TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA

AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA

GGCTGCTATGGCCAAGTCTATTTTTGTTTTGCAAAGGAAAGCAGCTAGACCTCTAGCGCCGTTTGTTTATCCCTTGCAAA

GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-282)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA159	60.443	99.685	0.603
comYH	Streptococcus mutans UA140	60.127	99.685	0.599

Detailed information NTG0778748