Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PH545_RS00005 Genome accession   NZ_CP116414
Coordinates   3609982..82 (+) Length   339 a.a.
NCBI ID   WP_289880687.1    Uniprot ID   -
Organism   Vibrio harveyi strain K2014767     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604982..5082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - pilM 3609982..82 (+) -3609899 - - Machinery gene

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 38123.43 Da        Isoelectric Point: 5.8976

>NTDB_id=777261 PH545_RS00005 WP_289880687.1 3609982..82(+) (pilM) [Vibrio harveyi strain K2014767]
MDKLLVTGIDISYNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEIRKELPFWARRVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFVKLDADEQMRGTDSYQVFATRKDVVETRVDALQKSGLKTV
LVDVHSQSLGHIWKLAVERFPEKSKYCLLDISALSSSFTMFTEQSELFHKEFPYGTRTSNDLFQQDPLAEDSQVATEQFN
RQIVDRVKRQIQLYTSINGNQDIKGIWLSGEGAATPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGEHAVSH

Nucleotide


Download         Length: 0 bp        

>NTDB_id=777261 PH545_RS00005 WP_289880687.1 3609982..82(+) (pilM) [Vibrio harveyi strain K2014767]

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

89.941

100

0.899
  pilM Vibrio cholerae strain A1552

48.538

100

0.491