Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PF552_RS01535 Genome accession   NZ_CP115632
Coordinates   329402..330142 (+) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324402..335142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS01520 (PF552_01520) - 326574..327664 (+) 1091 WP_085947913.1 IS4-like element ISAba1 family transposase -
  PF552_RS01525 (PF552_01525) pilM 327706..328764 (+) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  PF552_RS01530 (PF552_01530) pilN 328764..329405 (+) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  PF552_RS01535 (PF552_01535) pilO 329402..330142 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF552_RS01540 (PF552_01540) pilP 330153..330680 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PF552_RS01545 (PF552_01545) - 330743..332908 (+) 2166 Protein_294 type IV pilus secretin PilQ family protein -
  PF552_RS01550 (PF552_01550) aroK 332920..333489 (+) 570 WP_000643712.1 shikimate kinase AroK -
  PF552_RS01555 (PF552_01555) aroB 333518..334600 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=772961 PF552_RS01535 WP_000076106.1 329402..330142(+) (pilO) [Acinetobacter baumannii strain 2022CK-00063]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=772961 PF552_RS01535 WP_000076106.1 329402..330142(+) (pilO) [Acinetobacter baumannii strain 2022CK-00063]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679