Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PDI58_RS14645 | Genome accession | NZ_CP115474 |
| Coordinates | 2896775..2897245 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain AF4005 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2875732..2902291 | 2896775..2897245 | within | 0 |
Gene organization within MGE regions
Location: 2875732..2902291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDI58_RS14500 (PDI58_14500) | groES | 2875732..2876016 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| PDI58_RS14505 (PDI58_14505) | groL | 2876092..2877708 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| PDI58_RS14510 (PDI58_14510) | - | 2878248..2879555 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| PDI58_RS14515 (PDI58_14515) | - | 2879999..2881222 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| PDI58_RS14520 (PDI58_14520) | lukH | 2881658..2882713 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| PDI58_RS14525 (PDI58_14525) | lukG | 2882735..2883751 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| PDI58_RS14530 (PDI58_14530) | sph | 2883989..2884819 (-) | 831 | Protein_2829 | sphingomyelin phosphodiesterase | - |
| PDI58_RS14535 (PDI58_14535) | - | 2884870..2885907 (-) | 1038 | WP_000857200.1 | site-specific integrase | - |
| PDI58_RS14540 (PDI58_14540) | - | 2886098..2886811 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| PDI58_RS14545 (PDI58_14545) | - | 2886890..2887072 (-) | 183 | WP_000705245.1 | hypothetical protein | - |
| PDI58_RS14550 (PDI58_14550) | - | 2887143..2887328 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| PDI58_RS14555 (PDI58_14555) | - | 2887325..2887471 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| PDI58_RS14560 (PDI58_14560) | - | 2887545..2888399 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| PDI58_RS14565 (PDI58_14565) | - | 2888411..2889127 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| PDI58_RS14570 (PDI58_14570) | - | 2889291..2889533 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| PDI58_RS14575 (PDI58_14575) | - | 2889546..2889989 (+) | 444 | WP_000435360.1 | hypothetical protein | - |
| PDI58_RS14580 (PDI58_14580) | - | 2890004..2890144 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| PDI58_RS14585 (PDI58_14585) | - | 2890137..2890346 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| PDI58_RS14590 (PDI58_14590) | - | 2890403..2891152 (+) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| PDI58_RS14595 (PDI58_14595) | - | 2891168..2891365 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| PDI58_RS14600 (PDI58_14600) | - | 2891352..2891732 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| PDI58_RS14605 (PDI58_14605) | - | 2891787..2892110 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| PDI58_RS14610 (PDI58_14610) | - | 2892107..2892268 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| PDI58_RS14615 (PDI58_14615) | - | 2892363..2892665 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| PDI58_RS14620 (PDI58_14620) | - | 2892670..2892930 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| PDI58_RS14625 (PDI58_14625) | - | 2892939..2893202 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| PDI58_RS14630 (PDI58_14630) | - | 2893211..2895154 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| PDI58_RS14635 (PDI58_14635) | - | 2895156..2896076 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| PDI58_RS14640 (PDI58_14640) | - | 2896157..2896774 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| PDI58_RS14645 (PDI58_14645) | ssbA | 2896775..2897245 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| PDI58_RS14650 (PDI58_14650) | - | 2897275..2898168 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| PDI58_RS14655 (PDI58_14655) | - | 2898175..2898393 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| PDI58_RS14660 (PDI58_14660) | - | 2898402..2898806 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PDI58_RS14665 (PDI58_14665) | - | 2898819..2899190 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| PDI58_RS14670 (PDI58_14670) | - | 2899190..2899447 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| PDI58_RS14675 (PDI58_14675) | - | 2899444..2899692 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| PDI58_RS14680 (PDI58_14680) | - | 2899707..2899952 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| PDI58_RS14685 (PDI58_14685) | - | 2899949..2900485 (+) | 537 | WP_000185693.1 | dUTPase | - |
| PDI58_RS14690 (PDI58_14690) | - | 2900522..2900767 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| PDI58_RS14695 (PDI58_14695) | - | 2900764..2900970 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| PDI58_RS14700 (PDI58_14700) | - | 2900967..2901116 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| PDI58_RS14705 (PDI58_14705) | - | 2901116..2901316 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| PDI58_RS14710 (PDI58_14710) | - | 2901344..2901760 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| PDI58_RS14715 (PDI58_14715) | - | 2901992..2902291 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=772332 PDI58_RS14645 WP_000934759.1 2896775..2897245(+) (ssbA) [Staphylococcus aureus strain AF4005]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=772332 PDI58_RS14645 WP_000934759.1 2896775..2897245(+) (ssbA) [Staphylococcus aureus strain AF4005]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |