Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   O6U12_RS17440 Genome accession   NZ_CP114899
Coordinates   3282338..3283450 (-) Length   370 a.a.
NCBI ID   WP_003243515.1    Uniprot ID   A0AAE2SM46
Organism   Bacillus subtilis strain     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3277338..3288450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS17425 (O6U12_17425) gyrA 3277428..3279893 (-) 2466 WP_014475555.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  O6U12_RS17430 (O6U12_17430) gyrB 3280104..3282020 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  O6U12_RS17435 (O6U12_17435) remB 3282075..3282320 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  O6U12_RS17440 (O6U12_17440) recF 3282338..3283450 (-) 1113 WP_003243515.1 DNA replication/repair protein RecF Machinery gene
  O6U12_RS17445 (O6U12_17445) rlbA 3283466..3283681 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  O6U12_RS17450 (O6U12_17450) dnaN 3283812..3284948 (-) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  O6U12_RS17455 (O6U12_17455) dnaA 3285137..3286477 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  O6U12_RS17460 (O6U12_17460) rpmH 3287105..3287239 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  O6U12_RS17465 (O6U12_17465) rnpA 3287391..3287741 (+) 351 WP_014481515.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42304.34 Da        Isoelectric Point: 7.3660

>NTDB_id=767617 O6U12_RS17440 WP_003243515.1 3282338..3283450(-) (recF) [Bacillus subtilis strain]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=767617 O6U12_RS17440 WP_003243515.1 3282338..3283450(-) (recF) [Bacillus subtilis strain]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAGCAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTTTACCTCCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTTGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGTCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACGGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGCGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

100

100

1