Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   O6U12_RS09415 Genome accession   NZ_CP114899
Coordinates   1738783..1739061 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733783..1744061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS09395 (O6U12_09395) ade 1733847..1735580 (-) 1734 WP_017696826.1 adenine deaminase -
  O6U12_RS09400 (O6U12_09400) ktrC 1735736..1736401 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  O6U12_RS09405 (O6U12_09405) ykqA 1736464..1737291 (-) 828 WP_017696825.1 gamma-glutamylcyclotransferase -
  O6U12_RS09410 (O6U12_09410) kinC 1737307..1738593 (-) 1287 WP_017696824.1 two-component sensor histidine kinase KinC -
  O6U12_RS09415 (O6U12_09415) abrB 1738783..1739061 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  O6U12_RS09420 (O6U12_09420) mreBH 1739345..1740352 (+) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  O6U12_RS09425 (O6U12_09425) ykpC 1740453..1740587 (+) 135 WP_003238865.1 protein YkpC -
  O6U12_RS09430 (O6U12_09430) ampS 1740697..1741929 (+) 1233 WP_003232341.1 aminopeptidase -
  O6U12_RS09435 (O6U12_09435) panEB 1741963..1742874 (-) 912 WP_017696822.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=767587 O6U12_RS09415 WP_003244728.1 1738783..1739061(-) (abrB) [Bacillus subtilis strain]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=767587 O6U12_RS09415 WP_003244728.1 1738783..1739061(-) (abrB) [Bacillus subtilis strain]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576