Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   OIY87_RS07255 Genome accession   NZ_CP113954
Coordinates   1435267..1435707 (-) Length   146 a.a.
NCBI ID   WP_012962070.1    Uniprot ID   A0A139MWJ9
Organism   Streptococcus gallolyticus strain XH2168     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1430001..1449202 1435267..1435707 within 0


Gene organization within MGE regions


Location: 1430001..1449202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS07235 (OIY87_08550) - 1430001..1430453 (-) 453 WP_009854390.1 MarR family winged helix-turn-helix transcriptional regulator -
  OIY87_RS07240 (OIY87_08555) - 1430443..1431420 (-) 978 WP_013643183.1 zinc-binding dehydrogenase -
  OIY87_RS07245 (OIY87_08560) rcrQ 1431687..1433459 (-) 1773 WP_013643184.1 ABC transporter ATP-binding protein Regulator
  OIY87_RS07250 (OIY87_08565) rcrP 1433449..1435263 (-) 1815 WP_009854393.1 ABC transporter ATP-binding protein Regulator
  OIY87_RS07255 (OIY87_08570) rcrR 1435267..1435707 (-) 441 WP_012962070.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  OIY87_RS07260 (OIY87_08575) - 1435882..1436292 (-) 411 WP_013643186.1 peptide deformylase -
  OIY87_RS07265 (OIY87_08580) - 1436289..1436798 (-) 510 WP_013643187.1 GNAT family N-acetyltransferase -
  OIY87_RS07270 (OIY87_08585) gdhA 1437075..1438424 (-) 1350 WP_012962073.1 NADP-specific glutamate dehydrogenase -
  OIY87_RS07275 (OIY87_08590) - 1438671..1439168 (+) 498 WP_009854399.1 DUF308 domain-containing protein -
  OIY87_RS07280 (OIY87_08595) queF 1439225..1439716 (-) 492 WP_009854400.1 preQ(1) synthase -
  OIY87_RS07285 (OIY87_08600) queE 1439729..1440442 (-) 714 WP_013643188.1 7-carboxy-7-deazaguanine synthase QueE -
  OIY87_RS07290 (OIY87_08605) queD 1440435..1440881 (-) 447 WP_009854402.1 6-carboxytetrahydropterin synthase QueD -
  OIY87_RS07295 (OIY87_08610) queC 1440887..1441534 (-) 648 WP_013643189.1 7-cyano-7-deazaguanine synthase QueC -
  OIY87_RS07300 (OIY87_08615) - 1441776..1443545 (-) 1770 WP_009854404.1 ABC transporter ATP-binding protein -
  OIY87_RS07305 (OIY87_08620) - 1443548..1445287 (-) 1740 WP_013643190.1 ABC transporter ATP-binding protein -
  OIY87_RS07310 (OIY87_08625) - 1445365..1447236 (-) 1872 WP_013643191.1 ABC-F family ATP-binding cassette domain-containing protein -
  OIY87_RS07315 (OIY87_08630) - 1447233..1448438 (-) 1206 WP_013643192.1 CCA tRNA nucleotidyltransferase -
  OIY87_RS07320 (OIY87_08635) dapB 1448435..1449202 (-) 768 WP_013643193.1 4-hydroxy-tetrahydrodipicolinate reductase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17156.66 Da        Isoelectric Point: 9.3565

>NTDB_id=763833 OIY87_RS07255 WP_012962070.1 1435267..1435707(-) (rcrR) [Streptococcus gallolyticus strain XH2168]
MHKKDPFSQFRDFINLMENRVHALAESHGVENLAGPQGFAVMYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGF
IQVVSSKEDKRYKQVVLTELGKSKAQDIQDFHDEMHRQILAGVDHEDLKISFRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=763833 OIY87_RS07255 WP_012962070.1 1435267..1435707(-) (rcrR) [Streptococcus gallolyticus strain XH2168]
ATGCACAAGAAAGATCCGTTTTCACAGTTTAGGGATTTTATCAATTTAATGGAAAATCGTGTCCACGCTCTTGCGGAAAG
TCATGGTGTTGAAAATCTAGCTGGTCCACAGGGATTTGCAGTGATGTATCTTCGTGATAATCCCGATAAAGAAATTTATA
TCAAAGACATTGAGAAGAGACTAAGAATTTCAAAGTCAGTGACTAGTAATTTGATTAAGCGCATGGAGAAAAATGGTTTT
ATCCAAGTTGTTTCGTCAAAAGAAGATAAGCGTTATAAGCAAGTTGTGTTGACTGAGCTTGGAAAATCAAAGGCTCAGGA
TATTCAAGATTTCCATGATGAAATGCATAGGCAAATCTTAGCTGGTGTTGACCATGAGGATCTCAAAATCTCGTTTCGCG
TCTTTGACCGCATTTTGAAAAATTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139MWJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.643

97.945

0.555