Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ORF34_RS05820 Genome accession   NZ_CP112873
Coordinates   1118919..1119497 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain O4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113919..1124497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORF34_RS22215 - 1114430..1114945 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ORF34_RS22220 - 1115186..1115812 (-) 627 Protein_1075 protoglobin domain-containing protein -
  ORF34_RS05805 (ORF34_05805) comW 1115867..1117396 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ORF34_RS05810 (ORF34_05810) yhxC 1117508..1118365 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ORF34_RS05815 (ORF34_05815) yhzC 1118393..1118626 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ORF34_RS05820 (ORF34_05820) comK 1118919..1119497 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ORF34_RS05825 (ORF34_05825) yhxD 1119544..1120443 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ORF34_RS05830 (ORF34_05830) yhjA 1120660..1120929 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ORF34_RS05835 (ORF34_05835) yhjB 1120972..1122441 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  ORF34_RS05840 (ORF34_05840) yhjC 1122438..1122638 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ORF34_RS05845 (ORF34_05845) - 1122846..1123208 (-) 363 WP_003233132.1 hypothetical protein -
  ORF34_RS05850 (ORF34_05850) yhjE 1123360..1123983 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ORF34_RS05855 (ORF34_05855) lepB 1123985..1124491 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=758560 ORF34_RS05820 WP_003245329.1 1118919..1119497(+) (comK) [Bacillus subtilis strain O4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=758560 ORF34_RS05820 WP_003245329.1 1118919..1119497(+) (comK) [Bacillus subtilis strain O4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1