Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OMP06_RS03080 Genome accession   NZ_CP110462
Coordinates   660006..660416 (+) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   A0A0E1JQ57
Organism   Acinetobacter baumannii strain RBH2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655006..665416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS03065 (OMP06_03065) - 655995..658301 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  OMP06_RS03070 (OMP06_03070) - 658346..659119 (-) 774 WP_057066303.1 SDR family oxidoreductase -
  OMP06_RS03075 (OMP06_03075) mazG 659231..660037 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  OMP06_RS03080 (OMP06_03080) comEA 660006..660416 (+) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  OMP06_RS03085 (OMP06_03085) pcnB 660541..662004 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  OMP06_RS03090 (OMP06_03090) folK 662001..662483 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OMP06_RS03095 (OMP06_03095) panB 662529..663338 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OMP06_RS03100 (OMP06_03100) panC 663342..664190 (+) 849 WP_064191074.1 pantoate--beta-alanine ligase -
  OMP06_RS03105 (OMP06_03105) rapZ 664213..665064 (+) 852 WP_000821671.1 RNase adapter RapZ -
  OMP06_RS03110 (OMP06_03110) - 665061..665330 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=754994 OMP06_RS03080 WP_001978433.1 660006..660416(+) (comEA) [Acinetobacter baumannii strain RBH2]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=754994 OMP06_RS03080 WP_001978433.1 660006..660416(+) (comEA) [Acinetobacter baumannii strain RBH2]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1JQ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412