Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OL235_RS01965 Genome accession   NZ_CP110237
Coordinates   445061..446875 (+) Length   604 a.a.
NCBI ID   WP_275469497.1    Uniprot ID   A0AAF0I9S4
Organism   Vagococcus intermedius strain STAA25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 440061..451875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL235_RS01945 (OL235_01945) - 440266..441162 (-) 897 WP_275469493.1 LysR family transcriptional regulator -
  OL235_RS01950 (OL235_01950) - 441277..442290 (+) 1014 WP_275469494.1 YeiH family protein -
  OL235_RS01955 (OL235_01955) - 442472..443737 (+) 1266 WP_275469495.1 NCS2 family permease -
  OL235_RS01960 (OL235_01960) - 443838..445028 (+) 1191 WP_275469496.1 competence protein CoiA -
  OL235_RS01965 (OL235_01965) pepF 445061..446875 (+) 1815 WP_275469497.1 oligoendopeptidase F Regulator
  OL235_RS01970 (OL235_01970) - 446908..447567 (-) 660 WP_275469498.1 DsbA family protein -
  OL235_RS01975 (OL235_01975) - 447643..448233 (-) 591 WP_275469499.1 CYTH domain-containing protein -
  OL235_RS01980 (OL235_01980) - 448415..449134 (+) 720 WP_275469500.1 GTP pyrophosphokinase family protein -
  OL235_RS01985 (OL235_01985) - 449154..449984 (+) 831 WP_275469501.1 NAD kinase -
  OL235_RS01990 (OL235_01990) - 449974..450873 (+) 900 WP_275469502.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68754.85 Da        Isoelectric Point: 4.5249

>NTDB_id=753316 OL235_RS01965 WP_275469497.1 445061..446875(+) (pepF) [Vagococcus intermedius strain STAA25]
MTTTQQLPKRLEVPSEMTWDLTTMFATDEAFNEALASFSSKIATVKAHQGKLKEGPSALLEAIEAIASISREFELLYVYS
HLKNDQDTTNTAYQAMHAQASSLSAQVNEAMSWFEPELLQLSDDEIWRYFEEEAKLTEYSHFIETIISERPHILTEKEEA
LLAGASEIFGASSKAFSILNNADFKFPTVTNEEGQEVQLSHGLYGQLLESTNAKVREEAFKGMYSVYQQFQNTLATTLSN
HVKGHNYKATVRNYSSAREAALSANHIPESVYDTLISVVRNNLPSLHRYVALRKKLLGLDALHMYDMYTPILGEAQIRYS
YEEAKEKSLEALKPMGEEYLAIVKEAYDSRWIDVVENQGKRSGAYSSGCYDSAPYILMNWHDSLDQMYTLVHEMGHSVHS
YLTRNNQPYMYGDYSIFLAEIASTTNENLLTEYLLETETDPQVRAYVLNRYLDGFKGTIFRQTQFAEFEHFIHTEDAKGV
PLTSDYLNEYYGNLNEIYYGAAVEKDPEIAVEWSRIPHFYYNYYVYQYSTGFSAASALAEKIISEEEGALDKYLTFLKAG
SSDYPIEVMKKAGVDMTSPTYIEEAMAVFNTRLAEFEELVASFN

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=753316 OL235_RS01965 WP_275469497.1 445061..446875(+) (pepF) [Vagococcus intermedius strain STAA25]
ATGACTACAACCCAACAATTACCTAAACGATTAGAAGTTCCCAGTGAGATGACTTGGGATTTAACAACGATGTTTGCAAC
AGATGAGGCTTTCAACGAGGCTTTGGCGTCATTTTCGAGTAAGATAGCGACGGTCAAAGCACATCAAGGAAAATTGAAAG
AAGGGCCATCAGCTTTATTAGAAGCCATTGAAGCAATTGCTTCAATTTCTCGCGAGTTTGAGTTGCTATATGTTTACTCC
CATTTAAAAAATGATCAAGATACTACAAATACCGCTTATCAAGCAATGCATGCTCAAGCAAGTAGCTTGTCCGCTCAAGT
CAATGAAGCTATGTCGTGGTTTGAACCAGAATTATTACAACTAAGTGACGATGAGATTTGGCGCTATTTTGAAGAGGAAG
CTAAGCTTACAGAATATAGCCATTTTATTGAGACAATTATTAGCGAGCGTCCACACATTTTAACTGAAAAGGAAGAAGCT
CTTTTAGCCGGTGCCAGTGAAATTTTTGGTGCTTCAAGTAAAGCCTTTTCCATTTTGAATAATGCTGATTTTAAATTTCC
AACGGTAACGAATGAAGAAGGACAAGAAGTTCAATTATCTCATGGCTTGTATGGCCAGTTGTTAGAGAGTACTAATGCTA
AAGTGCGTGAGGAAGCATTTAAAGGGATGTACAGTGTTTATCAACAATTTCAAAATACGCTCGCAACAACCCTTAGTAAC
CATGTCAAAGGACATAACTATAAAGCAACTGTTAGAAACTATTCATCAGCCCGTGAGGCAGCTTTGAGTGCCAATCACAT
TCCAGAGAGTGTTTACGATACATTGATTTCAGTGGTCAGAAATAATTTGCCTTCGTTACATCGCTATGTTGCTCTTAGAA
AAAAATTATTAGGCTTAGATGCTTTACATATGTATGATATGTACACACCAATTTTAGGTGAGGCACAAATTCGTTATTCC
TATGAGGAAGCGAAAGAGAAATCACTAGAAGCCTTGAAACCGATGGGAGAGGAGTACTTAGCGATTGTCAAAGAAGCTTA
TGACTCTAGATGGATTGACGTCGTTGAAAATCAAGGAAAAAGAAGTGGTGCGTATTCATCAGGTTGTTATGATTCAGCCC
CGTATATTTTGATGAATTGGCACGATAGTTTGGATCAGATGTACACACTTGTTCATGAGATGGGACACAGTGTTCATAGC
TATTTGACACGCAATAATCAGCCTTATATGTATGGCGATTATTCAATCTTTTTAGCAGAAATAGCGTCAACGACTAATGA
AAACTTATTGACGGAGTATTTATTAGAAACTGAGACGGACCCTCAAGTCAGAGCCTATGTGTTGAATCGTTATTTAGATG
GTTTTAAAGGGACAATTTTCCGTCAAACCCAATTTGCAGAATTTGAACATTTTATACATACTGAAGATGCCAAAGGAGTA
CCATTAACTAGTGATTATTTAAATGAGTATTACGGCAACCTTAATGAAATCTATTACGGAGCAGCTGTCGAGAAAGATCC
AGAGATAGCAGTCGAATGGTCACGTATTCCACATTTTTATTATAATTATTATGTTTATCAGTATTCAACTGGTTTTTCTG
CAGCTTCAGCTTTAGCTGAAAAAATTATTAGCGAAGAAGAAGGCGCTCTAGACAAGTATTTGACCTTCCTAAAAGCTGGT
AGCAGTGATTATCCAATTGAAGTCATGAAAAAAGCCGGTGTTGATATGACATCACCAACTTATATTGAAGAAGCTATGGC
GGTATTTAATACTCGTTTAGCCGAATTTGAAGAACTGGTGGCCAGCTTTAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.623

97.848

0.515