Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OL235_RS00515 Genome accession   NZ_CP110237
Coordinates   87323..88576 (+) Length   417 a.a.
NCBI ID   WP_275469226.1    Uniprot ID   A0AAF0CUW4
Organism   Vagococcus intermedius strain STAA25     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 82323..93576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL235_RS00495 (OL235_00495) - 83003..84283 (+) 1281 WP_275469222.1 pitrilysin family protein -
  OL235_RS00500 (OL235_00500) - 84270..85565 (+) 1296 WP_275469223.1 pitrilysin family protein -
  OL235_RS00505 (OL235_00505) - 85718..86572 (+) 855 WP_275469224.1 helix-turn-helix domain-containing protein -
  OL235_RS00510 (OL235_00510) pgsA 86623..87201 (+) 579 WP_275469225.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OL235_RS00515 (OL235_00515) cinA 87323..88576 (+) 1254 WP_275469226.1 competence/damage-inducible protein A Machinery gene
  OL235_RS00520 (OL235_00520) recA 88676..89731 (+) 1056 WP_275469227.1 recombinase RecA Machinery gene
  OL235_RS00525 (OL235_00525) rny 89994..91550 (+) 1557 WP_275469228.1 ribonuclease Y -
  OL235_RS00530 (OL235_00530) - 91687..92487 (+) 801 WP_275469229.1 TIGR00282 family metallophosphoesterase -
  OL235_RS00535 (OL235_00535) - 92508..92942 (+) 435 WP_275469230.1 YlbF family regulator -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45829.44 Da        Isoelectric Point: 4.9419

>NTDB_id=753310 OL235_RS00515 WP_275469226.1 87323..88576(+) (cinA) [Vagococcus intermedius strain STAA25]
MKAEIIAVGTELLLGQVVNTNATFISEELASLGFEIYYQTVVGDNTQRLEKLLDLADGRSELIILCGGLGPTDDDLTRDV
VAAHVGESLETDKQAMTKISRYMTKIGREMTENNRRQALTISGGKVVKNPRGLAIGTFYQGDETAYLLLPGPPSELIPMF
HEEVVPLLTQLLPQKEVLTSRVLRFYGIGESRLVTVLKDLIDTQSNPTIAPYAKENEVTLRLTAKTDDKCLADKLLSTME
ETIMSRVGTFFYGYGETNSLMAETVKLLKETNKTVTSAESLTAGLFQSLLGDVAGASVVYPGGVVTYATKVKSQLLGIPL
DKLEENGVISQFCAENMAKQIGKQLETDYAVSFTGVAGPDSLEDQEPGTVWLGIYSRKEGTRAEKFMFNGNRNQVRHHAV
MRGTDLLRRQILKETEK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=753310 OL235_RS00515 WP_275469226.1 87323..88576(+) (cinA) [Vagococcus intermedius strain STAA25]
ATGAAAGCAGAAATTATAGCAGTTGGGACAGAATTATTACTGGGACAAGTAGTTAATACGAATGCAACCTTTATCTCGGA
AGAATTAGCCAGTCTAGGATTTGAAATATATTATCAGACAGTGGTTGGTGACAATACTCAGCGCTTAGAAAAATTGTTAG
ATTTAGCTGATGGGCGCAGTGAGTTGATTATTTTATGTGGGGGCTTAGGACCGACTGATGATGATTTAACAAGAGATGTT
GTAGCCGCTCATGTAGGTGAAAGTTTGGAGACTGATAAGCAAGCCATGACTAAGATAAGTCGATATATGACTAAGATAGG
TCGAGAAATGACTGAAAATAACCGTCGTCAAGCCTTAACTATTTCAGGCGGTAAAGTGGTTAAAAATCCACGTGGTTTAG
CTATTGGGACATTTTATCAAGGCGATGAGACAGCTTATTTGTTGCTACCAGGGCCCCCAAGTGAGTTGATTCCAATGTTT
CATGAAGAGGTAGTTCCATTGCTGACACAGTTATTACCGCAAAAAGAAGTATTAACATCAAGGGTATTGAGGTTTTATGG
TATTGGGGAGTCTCGTTTAGTGACTGTTTTAAAAGACTTGATTGATACCCAAAGTAATCCGACTATTGCGCCATATGCTA
AAGAAAATGAAGTTACTTTACGTTTGACAGCTAAGACTGACGATAAATGTTTAGCAGACAAATTATTATCAACGATGGAA
GAGACTATTATGTCCCGTGTTGGCACGTTTTTCTATGGCTATGGTGAGACAAATTCATTGATGGCAGAAACAGTTAAACT
CTTAAAAGAGACAAATAAAACGGTTACGAGTGCAGAAAGTTTGACGGCAGGTCTATTTCAAAGTCTGCTTGGAGATGTGG
CAGGAGCTTCAGTTGTTTATCCTGGAGGTGTGGTAACATATGCGACTAAGGTGAAGAGTCAATTATTAGGCATCCCTTTA
GATAAATTAGAAGAAAATGGTGTTATAAGCCAATTTTGTGCTGAAAACATGGCAAAACAAATTGGGAAACAGTTAGAGAC
AGATTATGCAGTTTCCTTTACTGGAGTGGCAGGACCTGATTCTTTAGAAGATCAAGAGCCTGGGACAGTTTGGTTAGGTA
TATACTCTCGTAAAGAAGGAACACGTGCTGAGAAATTTATGTTTAACGGTAATCGTAATCAAGTGAGACATCATGCGGTC
ATGCGTGGAACAGATTTACTAAGACGGCAAATTTTAAAAGAAACAGAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

48.592

100

0.496
  cinA Streptococcus mitis SK321

48.357

100

0.494
  cinA Streptococcus mutans UA159

49.279

99.76

0.492
  cinA Streptococcus pneumoniae TIGR4

47.887

100

0.489
  cinA Streptococcus pneumoniae Rx1

47.418

100

0.484
  cinA Streptococcus pneumoniae R6

47.418

100

0.484
  cinA Streptococcus pneumoniae D39

47.183

100

0.482
  cinA Bacillus subtilis subsp. subtilis str. 168

47.044

97.362

0.458
  cinA Streptococcus suis isolate S10

41.363

98.561

0.408