Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OIO62_RS17430 Genome accession   NZ_CP107616
Coordinates   3678235..3679365 (+) Length   376 a.a.
NCBI ID   WP_031956569.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326932     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3673235..3684365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO62_RS17405 (OIO62_17405) - 3673498..3673704 (-) 207 WP_000182542.1 hypothetical protein -
  OIO62_RS17410 (OIO62_17410) - 3673758..3675869 (-) 2112 WP_001120666.1 TonB-dependent copper receptor -
  OIO62_RS17415 (OIO62_17415) - 3675942..3676370 (-) 429 WP_000231982.1 DUF2946 family protein -
  OIO62_RS17420 (OIO62_17420) def 3676407..3676937 (-) 531 WP_001196539.1 peptide deformylase -
  OIO62_RS17425 (OIO62_17425) tsaP 3677060..3678214 (+) 1155 WP_000755269.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OIO62_RS17430 (OIO62_17430) dprA 3678235..3679365 (+) 1131 WP_031956569.1 DNA-processing protein DprA Machinery gene
  OIO62_RS17435 (OIO62_17435) - 3679416..3679985 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  OIO62_RS17440 (OIO62_17440) - 3680377..3681297 (-) 921 WP_094081163.1 DMT family transporter -
  OIO62_RS17445 (OIO62_17445) - 3681403..3682053 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  OIO62_RS17450 (OIO62_17450) - 3682190..3683404 (+) 1215 WP_000372838.1 MFS transporter -
  OIO62_RS17455 (OIO62_17455) - 3683426..3684190 (+) 765 WP_000786957.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41830.35 Da        Isoelectric Point: 6.4984

>NTDB_id=741568 OIO62_RS17430 WP_031956569.1 3678235..3679365(+) (dprA) [Acinetobacter baumannii strain 1326932]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=741568 OIO62_RS17430 WP_031956569.1 3678235..3679365(+) (dprA) [Acinetobacter baumannii strain 1326932]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCAATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAACATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGTCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAAATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.872

100

0.979

  dprA Acinetobacter baumannii strain A118

97.606

100

0.976

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378