Detailed information NTG0739253

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OFO16_RS01185
• Genome accession: NZ_CP107282
• Coordinates: 255471..256475 (-)
• Length: 334 a.a.
• NCBI ID: WP_263837899.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain PWH3a
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 250471..261475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFO16_RS01155 (OFO16_01155)	zapB	250664..250906 (+)	243	WP_263837893.1	cell division protein ZapB	-
OFO16_RS01160 (OFO16_01160)	rraA	251010..251549 (-)	540	WP_263837894.1	ribonuclease E activity regulator RraA	-
OFO16_RS01165 (OFO16_01165)	-	251626..252543 (-)	918	WP_263837895.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OFO16_RS01170 (OFO16_01170)	hslU	252751..254082 (-)	1332	WP_263837896.1	HslU--HslV peptidase ATPase subunit	-
OFO16_RS01175 (OFO16_01175)	hslV	254106..254657 (-)	552	WP_263837897.1	ATP-dependent protease subunit HslV	-
OFO16_RS01180 (OFO16_01180)	-	254776..255321 (-)	546	WP_263837898.1	SPOR domain-containing protein	-
OFO16_RS01185 (OFO16_01185)	cytR	255471..256475 (-)	1005	WP_263837899.1	DNA-binding transcriptional regulator CytR	Regulator
OFO16_RS01190 (OFO16_01190)	priA	256809..259013 (-)	2205	WP_263837900.1	primosomal protein N'	-
OFO16_RS01195 (OFO16_01195)	rpmE	259311..259532 (+)	222	WP_176290777.1	50S ribosomal protein L31	-
OFO16_RS01200 (OFO16_01200)	rpsJ	259991..260302 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
OFO16_RS01205 (OFO16_01205)	rplC	260317..260946 (+)	630	WP_176290778.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36752.18 Da
• Isoelectric Point: 6.3868

>NTDB_id=739253 OFO16_RS01185 WP_263837899.1 255471..256475(-) (cytR) [Vibrio natriegens strain PWH3a]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEDAVLDAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSYVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIATEFSFEGGAKAVRKLLELHEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPAR

Nucleotide

• Length: 1005 bp

>NTDB_id=739253 OFO16_RS01185 WP_263837899.1 255471..256475(-) (cytR) [Vibrio natriegens strain PWH3a]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCACTAATGAACCCGGAGAA
AGTCTCAGCGTCTACGCGAAAACGAGTAGAAGACGCGGTACTTGATGCGGGTTACTCACCAAACTCTTTAGCACGTAATT
TACGCAGAAACGAATCGAAGACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGATGCTGCAATGGAGCACGGCTATCTCGTATTGCTTGGCGATAGCGGTCAGCAAAAAAAACGCGAAAGTTCATA
TGTGAACCTGGTCTTTACTAAGCAAGCTGACGGGATGCTGCTACTTGGTACCGACTTACCGTTTGATGTCAGCAAACCCG
AACAAAAAAACCTGCCACCTATGGTCATGGCCTGTGAGTTTGCTCCTGAACTGGAGCTACCAACCGTTCATATCGATAAC
CTGACATCAGCATTTGAAGCCGTCAATTACCTGACCCAGCTTGGTCATAAACGTATTGCGCAAATTTCAGGTCCCGATAC
AGCGGTATTGTGTCAATTCCGTCAACAAGGCTACCAACAAGCATTGCGTCGTGCAGGCATAAACAAAGATCCACAATACA
GTATTGCCACCGAATTCTCTTTTGAAGGCGGAGCAAAAGCAGTACGTAAGTTGCTGGAGCTACACGAGCCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGTGCCATTCAAGAAGCGAAAAAGCTCGGTTTCCGTGTACCGCAAGATCT
GTCGGTAGTCGGGTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACCATATCTCAGCCTCGCTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTCTAAAAGGGCACGACGTCCATTCTGGATCTCGCCTTCTAGAA
ACAAACCTGATTGTTCGTGGAAGCGCTGCGCCACCAGCGAGATAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	96.108	100	0.961
cytR	Vibrio cholerae C6706	88.623	100	0.886