Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FNP71_RS13455 Genome accession   NZ_AP019714
Coordinates   2547952..2548287 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain NBRC 13719     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2542952..2553287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNP71_RS13430 (NBRC13719_25340) gcvT 2543468..2544556 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  FNP71_RS13435 (NBRC13719_25350) hepAA 2544998..2546671 (+) 1674 WP_004398544.1 SNF2-related protein -
  FNP71_RS13440 (NBRC13719_25360) yqhG 2546692..2547486 (+) 795 WP_003230200.1 YqhG family protein -
  FNP71_RS13445 (NBRC13719_25370) sinI 2547669..2547842 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  FNP71_RS13455 (NBRC13719_25380) sinR 2547952..2548287 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  FNP71_RS13460 (NBRC13719_25390) tasA 2548380..2549165 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  FNP71_RS13465 (NBRC13719_25400) sipW 2549229..2549801 (-) 573 WP_003246088.1 signal peptidase I SipW -
  FNP71_RS13470 (NBRC13719_25410) tapA 2549785..2550546 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  FNP71_RS13475 (NBRC13719_25420) yqzG 2550818..2551144 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  FNP71_RS13480 (NBRC13719_25430) spoIITA 2551186..2551365 (-) 180 WP_003230176.1 YqzE family protein -
  FNP71_RS13485 (NBRC13719_25440) comGG 2551436..2551810 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  FNP71_RS13490 (NBRC13719_25450) comGF 2551811..2552194 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  FNP71_RS13495 (NBRC13719_25460) comGE 2552220..2552567 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  FNP71_RS13500 (NBRC13719_25470) comGD 2552551..2552982 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  FNP71_RS13505 (NBRC13719_25480) comGC 2552972..2553268 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=73433 FNP71_RS13455 WP_003226345.1 2547952..2548287(+) (sinR) [Bacillus subtilis subsp. subtilis strain NBRC 13719]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=73433 FNP71_RS13455 WP_003226345.1 2547952..2548287(+) (sinR) [Bacillus subtilis subsp. subtilis strain NBRC 13719]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment