Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA14_RS08035 Genome accession   NZ_CP106742
Coordinates   1735627..1736184 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1730627..1741184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA14_RS08020 (PALA14_01583) pilY1 1730719..1734210 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PALA14_RS08025 (PALA14_01584) pilX 1734222..1734809 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA14_RS08030 (PALA14_01585) pilW 1734806..1735630 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA14_RS08035 (PALA14_01586) pilV 1735627..1736184 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA14_RS08040 (PALA14_01587) - 1736175..1736681 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA14_RS08045 (PALA14_01588) - 1736787..1737296 (-) 510 WP_003112829.1 GspH/FimT family pseudopilin -
  PALA14_RS08050 (PALA14_01589) thiO 1737431..1738525 (+) 1095 WP_010895678.1 glycine oxidase ThiO -
  PALA14_RS08055 (PALA14_01590) pilR 1738571..1739908 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=734235 PALA14_RS08035 WP_003119423.1 1735627..1736184(-) (pilV) [Pseudomonas aeruginosa strain PALA14]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=734235 PALA14_RS08035 WP_003119423.1 1735627..1736184(-) (pilV) [Pseudomonas aeruginosa strain PALA14]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995