Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   N7K38_RS03720 Genome accession   NZ_CP104762
Coordinates   729308..730030 (-) Length   240 a.a.
NCBI ID   WP_010746696.1    Uniprot ID   R2NUH8
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 724308..735030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS03690 (N7K38_03690) - 724610..725170 (+) 561 WP_010746702.1 TetR/AcrR family transcriptional regulator -
  N7K38_RS03695 (N7K38_03695) - 725289..725726 (+) 438 WP_010746701.1 DUF948 domain-containing protein -
  N7K38_RS03700 (N7K38_03700) - 725729..726295 (+) 567 WP_010746700.1 YtxH domain-containing protein -
  N7K38_RS03705 (N7K38_03705) - 726407..726652 (+) 246 WP_010746699.1 helix-turn-helix transcriptional regulator -
  N7K38_RS03710 (N7K38_03710) - 726963..728063 (-) 1101 WP_010746698.1 Xaa-Pro peptidase family protein -
  N7K38_RS03715 (N7K38_03715) ccpA 728257..729261 (+) 1005 WP_010746697.1 catabolite control protein A -
  N7K38_RS03720 (N7K38_03720) treR 729308..730030 (-) 723 WP_010746696.1 trehalose operon repressor Regulator
  N7K38_RS03725 (N7K38_03725) treP 730406..732352 (+) 1947 WP_010746695.1 PTS system trehalose-specific EIIBC component -
  N7K38_RS03730 (N7K38_03730) treC 732368..733990 (+) 1623 WP_010746694.1 alpha,alpha-phosphotrehalase -
  N7K38_RS03735 (N7K38_03735) - 734024..734530 (-) 507 WP_010746693.1 QueT transporter family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27818.79 Da        Isoelectric Point: 8.0018

>NTDB_id=732099 N7K38_RS03720 WP_010746696.1 729308..730030(-) (treR) [Enterococcus raffinosus strain ATCC 49464]
MKNYEVIYQAIERGILKGVYEAGSYLPSENKLRQTYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYDSSTDVISLKKVMINEKEVRVTGFEIGAVCWELIRTRAIDQKKVILDKDLLLTTVVPELDTEIAKDSIY
RYFENQLGLNIAFAEKEITIDALTDEDRELLDLNQHDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=732099 N7K38_RS03720 WP_010746696.1 729308..730030(-) (treR) [Enterococcus raffinosus strain ATCC 49464]
ATGAAAAATTATGAGGTGATTTACCAAGCAATCGAACGAGGAATTTTAAAAGGCGTTTATGAAGCGGGTTCTTATTTGCC
TAGTGAAAACAAATTGCGTCAAACCTACCATGTATCACGCGATACGATTCGCAAAGCCTTGTCTCTTCTGATGGCTAATG
GCTACATTCAAAAAATTCAAGGTAAAGGTTCACTTGTTTTGAAGCGAGAGCAGCTGCGATTTCCTGTTTCTGGTTTAACG
AGTTACAAGGAACTCCAAAATTCTTATGGCTATGACAGTAGTACGGACGTTATTAGTTTAAAGAAAGTTATGATTAATGA
AAAGGAAGTACGTGTGACTGGATTTGAAATCGGGGCTGTCTGCTGGGAATTGATTCGTACACGAGCGATCGACCAGAAAA
AAGTAATACTTGATAAAGACCTATTACTGACGACAGTTGTGCCTGAGCTAGATACTGAAATCGCAAAGGATTCCATTTAT
CGCTACTTTGAAAATCAATTGGGGTTGAATATCGCTTTTGCTGAAAAGGAAATCACGATTGATGCCCTGACTGATGAAGA
TCGAGAACTATTGGATCTTAATCAGCATGATATCAATATTGTTTCTGTAAAAAGTCGTGTATTTACTAGTGATGCTCGGC
AATTTCAATACACAGAAAGTCGTCACCAGGTGGATAAATTCCGCTTTTTCGATTTTGCACGACGACACCCTTCAACAATG
TAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2NUH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.847

98.333

0.5