Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N4267_RS18860 Genome accession   NZ_CP104354
Coordinates   182389..183249 (-) Length   286 a.a.
NCBI ID   WP_134986647.1    Uniprot ID   -
Organism   Vibrio cholerae strain PNUSAV001140     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177389..188249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS00855 (N4267_00855) gspL 177647..178858 (+) 1212 WP_001288747.1 type II secretion system protein GspL -
  N4267_RS00860 (N4267_00860) - 178868..179365 (+) 498 WP_000661347.1 type II secretion system protein M -
  N4267_RS00865 (N4267_00865) - 179367..180125 (+) 759 WP_057563692.1 type II secretion system protein N -
  N4267_RS00870 (N4267_00870) cysQ 180177..181004 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  N4267_RS00875 (N4267_00875) nudE 181027..181575 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  N4267_RS00880 (N4267_00880) nfuA 181714..182301 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  N4267_RS18860 comF 182389..183249 (-) 861 WP_134986647.1 ComF family protein Machinery gene
  N4267_RS00895 (N4267_00895) bioH 183185..183946 (+) 762 WP_260813179.1 pimeloyl-ACP methyl ester esterase BioH -
  N4267_RS00900 (N4267_00900) - 184108..184578 (+) 471 WP_000961393.1 hypothetical protein -
  N4267_RS00905 (N4267_00905) - 184673..186994 (-) 2322 WP_134986640.1 Tex family protein -
  N4267_RS00910 (N4267_00910) greB 187239..187721 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32523.45 Da        Isoelectric Point: 8.0588

>NTDB_id=729025 N4267_RS18860 WP_134986647.1 182389..183249(-) (comF) [Vibrio cholerae strain PNUSAV001140]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWPAMLTHWLRKTTAPLLTPECHLCRLALDINSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=729025 N4267_RS18860 WP_134986647.1 182389..183249(-) (comF) [Vibrio cholerae strain PNUSAV001140]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCCCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATATAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.601

100

0.986
  comF Vibrio campbellii strain DS40M4

45.798

83.217

0.381