Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYR91_RS20530 Genome accession   NZ_CP103784
Coordinates   3994837..3995355 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain RO-NN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3989837..4000355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS20500 (NYR91_20500) yyaJ 3990341..3991696 (+) 1356 WP_014478567.1 MFS transporter -
  NYR91_RS20505 (NYR91_20505) maa 3991730..3992284 (-) 555 WP_014478568.1 sugar O-acetyltransferase -
  NYR91_RS20510 (NYR91_20510) yyaH 3992300..3992680 (-) 381 WP_014478569.1 VOC family protein -
  NYR91_RS20515 (NYR91_20515) ccpB 3992748..3993671 (-) 924 WP_014478570.1 transcriptional regulator CcpB -
  NYR91_RS20520 (NYR91_20520) xth 3993731..3994489 (-) 759 WP_014478571.1 exodeoxyribonuclease III -
  NYR91_RS20525 (NYR91_20525) rpsR 3994554..3994793 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NYR91_RS20530 (NYR91_20530) ssbA 3994837..3995355 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NYR91_RS20535 (NYR91_20535) rpsF 3995396..3995683 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NYR91_RS20540 (NYR91_20540) ychF 3995794..3996894 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NYR91_RS20545 (NYR91_20545) yyaE 3997021..3999024 (-) 2004 WP_014478572.1 molybdopterin-dependent oxidoreductase -
  NYR91_RS20550 (NYR91_20550) yyzM 3999075..3999281 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=725055 NYR91_RS20530 WP_003219228.1 3994837..3995355(-) (ssbA) [Bacillus subtilis strain RO-NN-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=725055 NYR91_RS20530 WP_003219228.1 3994837..3995355(-) (ssbA) [Bacillus subtilis strain RO-NN-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378