Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYR92_RS17205 Genome accession   NZ_CP103783
Coordinates   3252058..3252702 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247058..3257702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS17170 (NYR92_17170) mrpB 3248250..3248681 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NYR92_RS17175 (NYR92_17175) mrpC 3248681..3249022 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NYR92_RS17180 (NYR92_17180) mrpD 3249015..3250496 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NYR92_RS17185 (NYR92_17185) mrpE 3250502..3250978 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  NYR92_RS17190 (NYR92_17190) mrpF 3250978..3251262 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NYR92_RS17195 (NYR92_17195) mnhG 3251246..3251620 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NYR92_RS17200 (NYR92_17200) yuxO 3251659..3252039 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NYR92_RS17205 (NYR92_17205) comA 3252058..3252702 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NYR92_RS17210 (NYR92_17210) comP 3252783..3255092 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  NYR92_RS17215 (NYR92_17215) comX 3255107..3255274 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  NYR92_RS17220 (NYR92_17220) comQ 3255262..3256161 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  NYR92_RS17225 (NYR92_17225) degQ 3256346..3256486 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NYR92_RS17230 (NYR92_17230) - 3256708..3256833 (+) 126 WP_003228793.1 hypothetical protein -
  NYR92_RS17235 (NYR92_17235) - 3256947..3257315 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=724958 NYR92_RS17205 WP_003220716.1 3252058..3252702(-) (comA) [Bacillus subtilis subsp. subtilis str. 168]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=724958 NYR92_RS17205 WP_003220716.1 3252058..3252702(-) (comA) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1