Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GSP_RS11685 | Genome accession | NZ_AP019372 |
| Coordinates | 2476590..2477096 (-) | Length | 168 a.a. |
| NCBI ID | WP_014614920.1 | Uniprot ID | A0A161W350 |
| Organism | Staphylococcus pseudintermedius strain SP79 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2471590..2482096
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSP_RS11670 (GSP_22960) | - | 2472807..2474798 (+) | 1992 | WP_096636731.1 | catalase | - |
| GSP_RS11675 (GSP_22970) | - | 2475012..2476103 (-) | 1092 | WP_096636732.1 | Abi family protein | - |
| GSP_RS11680 (GSP_22980) | rpsR | 2476294..2476536 (-) | 243 | WP_014614919.1 | 30S ribosomal protein S18 | - |
| GSP_RS11685 (GSP_22990) | ssbA | 2476590..2477096 (-) | 507 | WP_014614920.1 | single-stranded DNA-binding protein | Machinery gene |
| GSP_RS11690 (GSP_23000) | rpsF | 2477119..2477415 (-) | 297 | WP_014614921.1 | 30S ribosomal protein S6 | - |
| GSP_RS11695 (GSP_23010) | sbi | 2477752..2479278 (+) | 1527 | WP_127505310.1 | Ig-binding surface protein Sbi/SpsK | - |
| GSP_RS11700 (GSP_23020) | - | 2479332..2480141 (-) | 810 | WP_015728517.1 | ABC transporter permease subunit | - |
| GSP_RS11705 (GSP_23030) | - | 2480134..2481069 (-) | 936 | WP_096636734.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18738.42 Da Isoelectric Point: 5.1957
>NTDB_id=72491 GSP_RS11685 WP_014614920.1 2476590..2477096(-) (ssbA) [Staphylococcus pseudintermedius strain SP79]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=72491 GSP_RS11685 WP_014614920.1 2476590..2477096(-) (ssbA) [Staphylococcus pseudintermedius strain SP79]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.773 |
100 |
0.679 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.14 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.182 |
65.476 |
0.381 |