Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NX823_RS01990 Genome accession   NZ_CP103352
Coordinates   389615..390013 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain SRCM117508     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 384615..395013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX823_RS01955 (NX823_01955) - 385365..385562 (+) 198 WP_121509395.1 hypothetical protein -
  NX823_RS01960 (NX823_01960) yckC 385582..386037 (+) 456 WP_014478793.1 RDD family protein -
  NX823_RS01965 (NX823_01965) yckD 386119..386451 (+) 333 WP_213382693.1 YckD family protein -
  NX823_RS01970 (NX823_01970) - 386579..387001 (+) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  NX823_RS01975 (NX823_01975) - 386989..387309 (+) 321 WP_014478796.1 DUF3147 family protein -
  NX823_RS01980 (NX823_01980) - 387328..388072 (+) 745 Protein_345 AAA family ATPase -
  NX823_RS01985 (NX823_01985) bglC 388145..389578 (+) 1434 WP_258994961.1 6-phospho-beta-glucosidase -
  NX823_RS01990 (NX823_01990) nin/comJ 389615..390013 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  NX823_RS01995 (NX823_01995) nucA/comI 390040..390489 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NX823_RS02000 (NX823_02000) tlpC 390657..392378 (-) 1722 Protein_349 methyl-accepting chemotaxis protein TlpC -
  NX823_RS02005 (NX823_02005) hxlB 392489..393046 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  NX823_RS02010 (NX823_02010) hxlA 393052..393684 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NX823_RS02015 (NX823_02015) hxlR 393913..394275 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=722264 NX823_RS01990 WP_014478800.1 389615..390013(-) (nin/comJ) [Bacillus subtilis strain SRCM117508]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=722264 NX823_RS01990 WP_014478800.1 389615..390013(-) (nin/comJ) [Bacillus subtilis strain SRCM117508]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977