Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NW973_RS07940 Genome accession   NZ_CP102961
Coordinates   1636003..1636500 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 03-RR-88     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631003..1641500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW973_RS07915 (NW973_07915) gcvPB 1631165..1632637 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  NW973_RS07920 (NW973_07920) gcvPA 1632630..1633976 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW973_RS07925 (NW973_07925) gcvT 1633996..1635087 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW973_RS07930 (NW973_07930) - 1635246..1635770 (-) 525 WP_001015121.1 shikimate kinase -
  NW973_RS07935 (NW973_07935) - 1635760..1635906 (-) 147 WP_001789879.1 hypothetical protein -
  NW973_RS07940 (NW973_07940) comGF 1636003..1636500 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW973_RS07945 (NW973_07945) comGE 1636418..1636717 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW973_RS07950 (NW973_07950) comGD 1636704..1637150 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW973_RS07955 (NW973_07955) comGC 1637128..1637439 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW973_RS07960 (NW973_07960) comGB 1637453..1638523 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW973_RS07965 (NW973_07965) comGA 1638495..1639469 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW973_RS07970 (NW973_07970) - 1639521..1640144 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW973_RS07975 (NW973_07975) - 1640141..1640470 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW973_RS07980 (NW973_07980) - 1640470..1641456 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=720580 NW973_RS07940 WP_001789864.1 1636003..1636500(-) (comGF) [Staphylococcus aureus strain 03-RR-88]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=720580 NW973_RS07940 WP_001789864.1 1636003..1636500(-) (comGF) [Staphylococcus aureus strain 03-RR-88]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964