Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   JMUB1273_RS04875 Genome accession   NZ_AP018922
Coordinates   974877..975446 (-) Length   189 a.a.
NCBI ID   WP_064130007.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JMUB1273     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 969877..980446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB1273_RS04855 (JMUB1273_0913) - 971382..972740 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  JMUB1273_RS04860 (JMUB1273_0914) - 972879..974390 (+) 1512 WP_031866180.1 bifunctional metallophosphatase/5'-nucleotidase -
  JMUB1273_RS04875 (JMUB1273_0917) comK/comK1 974877..975446 (-) 570 WP_064130007.1 competence protein ComK Regulator
  JMUB1273_RS04880 (JMUB1273_0918) - 975656..975874 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  JMUB1273_RS04885 (JMUB1273_0919) - 975955..976941 (-) 987 WP_000668815.1 lipoate--protein ligase -
  JMUB1273_RS04890 (JMUB1273_0920) - 977140..977316 (+) 177 WP_000214898.1 YkvS family protein -
  JMUB1273_RS04895 (JMUB1273_0921) - 977331..977933 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  JMUB1273_RS14220 - 978251..978313 (+) 63 WP_228764722.1 hypothetical protein -
  JMUB1273_RS04905 - 978852..978953 (+) 102 WP_001790623.1 hypothetical protein -
  JMUB1273_RS04910 - 978963..979235 (+) 273 WP_072470685.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22574.80 Da        Isoelectric Point: 9.6091

>NTDB_id=71627 JMUB1273_RS04875 WP_064130007.1 974877..975446(-) (comK/comK1) [Staphylococcus aureus strain JMUB1273]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYSNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=71627 JMUB1273_RS04875 WP_064130007.1 974877..975446(-) (comK/comK1) [Staphylococcus aureus strain JMUB1273]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAGCAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment