Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   NQZ91_RS08085 Genome accession   NZ_CP102145
Coordinates   1608993..1610786 (+) Length   597 a.a.
NCBI ID   WP_257104940.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603993..1615786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08075 (NQZ91_08075) leuS 1604779..1607280 (+) 2502 WP_257104941.1 leucine--tRNA ligase -
  NQZ91_RS08080 (NQZ91_08080) pbp3 1607529..1608779 (-) 1251 WP_172068125.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NQZ91_RS08085 (NQZ91_08085) oppA 1608993..1610786 (+) 1794 WP_257104940.1 oligopeptide ABC transporter substrate-binding protein Regulator
  NQZ91_RS08090 (NQZ91_08090) - 1611039..1612058 (+) 1020 WP_172060189.1 ABC transporter ATP-binding protein -
  NQZ91_RS08095 (NQZ91_08095) - 1612061..1613002 (+) 942 WP_172096626.1 ATP-binding cassette domain-containing protein -
  NQZ91_RS08100 (NQZ91_08100) opp4B 1613004..1613960 (+) 957 WP_105160732.1 oligopeptide ABC transporter permease -
  NQZ91_RS08105 (NQZ91_08105) - 1613974..1614876 (+) 903 WP_105110705.1 ABC transporter permease -
  NQZ91_RS08110 (NQZ91_08110) tadA 1614933..1615442 (+) 510 WP_257117316.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65411.98 Da        Isoelectric Point: 4.3996

>NTDB_id=714960 NQZ91_RS08085 WP_257104940.1 1608993..1610786(+) (oppA) [Streptococcus suis strain DNS20]
MKKTTKLFALAGITLLSASVLAACGAKSSSSSSEQTLSFPSEVKQDGSAVADAQLKYALVSATTSSGLLIDELTENTTDS
TFGGMVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFL
NIVGMEEYVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEHFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSVYEY
ISFNLGKYDEAAGKNVMDENAKMNDVNLRQAIAYAIDTKTAGEKLYNGLYHPANSLIISFFGELHDSELAGYTYDPEKAK
KLLDEAGYKDTNGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGNTFYDALQANDPAI
DMYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSEENTKLLDAISSTASFDEKTNLENYKAWQKYAHEQAFAIPTFESESIT
ALNKRVKNYDSNYGSASGKGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=714960 NQZ91_RS08085 WP_257104940.1 1608993..1610786(+) (oppA) [Streptococcus suis strain DNS20]
ATGAAAAAGACAACAAAACTCTTTGCCTTAGCAGGTATCACACTCTTATCTGCATCTGTTTTAGCAGCTTGTGGTGCTAA
GTCGTCATCAAGTTCATCTGAACAAACCTTGTCATTCCCATCTGAGGTGAAACAAGATGGTTCAGCTGTTGCAGACGCAC
AATTGAAATACGCTTTGGTTTCAGCTACAACTTCATCAGGACTTTTGATCGATGAATTGACTGAAAACACAACTGACTCA
ACATTTGGTGGAATGGTTGATATTTCATTGTTCGGTTACGATGGAGATCGTAAATTGGATGACTCAGGTCTTGCTAAAGC
TGAATTTGATGTAGAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTA
CAATCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACCGGTGTGCGTTTTGATGATAAATTCTTG
AACATCGTTGGTATGGAAGAGTATGTTGCAGGAACAGCATCAGACATCTCTGGTATTAAGAAAGTTGACGACTACACAGT
AGAATTGACTGTGAAAGAAATGTCACCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATATCCAACCAGAACATA
TCTATAAAGACATTCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACTGCTAAACTTGTAGGTATGGGTCCATGG
AAGATTAAAGAAATTGTTAACGGTGAGTCTATCACTTACGTTCCAAACGAACACTTCTTCAAGGGAACAACTCCAAAAAC
AAGTTCATTGAAAATCGATATCGTATCACCTGATACAATCGTTTCTGAGATGAAAGCTGGTAACTACGATATCGCAGATA
TGCCTGTTGATCAATTGGATTCATACAAAGATGCTTCTAACTTGAACATCGTTGGATCTTTGGATTCAGTTTACGAATAT
ATTTCATTCAACCTTGGTAAATATGACGAAGCTGCTGGCAAGAACGTTATGGATGAGAATGCTAAGATGAATGATGTGAA
TCTTCGTCAAGCGATTGCCTATGCTATTGATACCAAGACTGCTGGTGAGAAATTGTATAACGGCTTATACCACCCAGCAA
ACTCATTGATTATTTCATTCTTTGGTGAACTTCATGATTCTGAATTGGCAGGCTATACATACGATCCAGAAAAAGCTAAG
AAACTCTTGGATGAAGCTGGCTACAAGGATACAAACGGTGACGGCATTCGTGAAGGTAAAGACGGTAAAGAATTCAAAAT
CACTTTCGCAGCTCGTAAACGTACAGAAGCGAACGAAGCACTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCT
TGAATGTTGAATTGTACACTGGCCGTACTGTTGAAGGAAATACTTTCTACGATGCACTTCAAGCAAACGACCCTGCAATT
GATATGTATGCTGGTGGTTGGTCTACTGGTTACGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACAT
GTCACGTTTCGTATCTGAAGAAAATACAAAATTGTTGGATGCAATTAGTTCTACTGCTTCATTCGATGAGAAAACAAACC
TTGAAAACTACAAGGCTTGGCAAAAATATGCTCACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCTATTACA
GCATTGAACAAGCGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATTGCACTTGAAAATATCGA
ATTGACAGCTGATAAAGGTGTAGCGGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

88.777

100

0.888