Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XCCCN06v2_RS05500 Genome accession   NZ_CP101172
Coordinates   1303127..1304521 (-) Length   464 a.a.
NCBI ID   WP_162808570.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain CN06     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1298127..1309521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCCCN06v2_RS05480 pilC 1298413..1299669 (-) 1257 WP_075285409.1 type II secretion system F family protein Machinery gene
  XCCCN06v2_RS05485 - 1300006..1300455 (+) 450 WP_075285410.1 pilin -
  XCCCN06v2_RS05490 - 1300570..1300944 (+) 375 WP_269467167.1 pilin -
  XCCCN06v2_RS05495 pilB 1301003..1302709 (+) 1707 WP_187305920.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCCCN06v2_RS05500 pilR 1303127..1304521 (-) 1395 WP_162808570.1 sigma-54 dependent transcriptional regulator Regulator
  XCCCN06v2_RS05505 - 1304731..1306341 (-) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  XCCCN06v2_RS05510 sucC 1306575..1307744 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  XCCCN06v2_RS05515 sucD 1307769..1308644 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  XCCCN06v2_RS05520 - 1308748..1309158 (+) 411 WP_029628876.1 DNA-binding protein -
  XCCCN06v2_RS05525 - 1309162..1309464 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50351.73 Da        Isoelectric Point: 6.5131

>NTDB_id=709112 XCCCN06v2_RS05500 WP_162808570.1 1303127..1304521(-) (pilR) [Xanthomonas campestris pv. campestris strain CN06]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=709112 XCCCN06v2_RS05500 WP_162808570.1 1303127..1304521(-) (pilR) [Xanthomonas campestris pv. campestris strain CN06]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGTCACA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGAGCGAGACGCTGGTAGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTTACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGATTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGTTGGGCATCACGTTTCGGGCGC
TACGCTACAAACTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491