Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NLK52_RS01925 Genome accession   NZ_CP100436
Coordinates   362952..363350 (-) Length   132 a.a.
NCBI ID   WP_015382736.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 357952..368350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS01895 (NLK52_01895) yckA 358522..359202 (-) 681 WP_015382730.1 amino acid ABC transporter permease -
  NLK52_RS01900 (NLK52_01900) yckB 359212..360075 (-) 864 WP_015482776.1 transporter substrate-binding domain-containing protein -
  NLK52_RS01905 (NLK52_01905) - 360237..360434 (+) 198 WP_144052033.1 hypothetical protein -
  NLK52_RS01910 (NLK52_01910) yckC 360484..360915 (+) 432 WP_046340202.1 RDD family protein -
  NLK52_RS01915 (NLK52_01915) yckD 360997..361329 (+) 333 WP_015252849.1 YckD family protein -
  NLK52_RS01920 (NLK52_01920) bglC 361482..362915 (+) 1434 WP_015382735.1 6-phospho-beta-glucosidase -
  NLK52_RS01925 (NLK52_01925) nin/comJ 362952..363350 (-) 399 WP_015382736.1 DNA-entry nuclease inhibitor Regulator
  NLK52_RS01930 (NLK52_01930) nucA/comI 363377..363826 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NLK52_RS01935 (NLK52_01935) tlpC 363992..365713 (-) 1722 WP_041517645.1 methyl-accepting chemotaxis protein TlpC -
  NLK52_RS01940 (NLK52_01940) hxlB 365824..366381 (-) 558 WP_015482781.1 6-phospho-3-hexuloisomerase -
  NLK52_RS01945 (NLK52_01945) hxlA 366387..367019 (-) 633 WP_015482782.1 3-hexulose-6-phosphate synthase -
  NLK52_RS01950 (NLK52_01950) hxlR 367251..367613 (+) 363 WP_015482783.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14937.92 Da        Isoelectric Point: 5.1448

>NTDB_id=705398 NLK52_RS01925 WP_015382736.1 362952..363350(-) (nin/comJ) [Bacillus subtilis strain MEC_B298]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDETIKKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=705398 NLK52_RS01925 WP_015382736.1 362952..363350(-) (nin/comJ) [Bacillus subtilis strain MEC_B298]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAACGATTAAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTCCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

96.212

100

0.962