Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NIH92_RS08725 Genome accession   NZ_CP099989
Coordinates   1813368..1813841 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain KBN10P04593     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808368..1818841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIH92_RS08700 (NIH92_08700) - 1808832..1810937 (-) 2106 WP_001117590.1 HD domain-containing protein -
  NIH92_RS08705 (NIH92_08705) - 1810977..1811106 (-) 130 Protein_1681 hypothetical protein -
  NIH92_RS08710 (NIH92_08710) rpoZ 1811145..1811423 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIH92_RS08715 (NIH92_08715) gmk 1811496..1812125 (-) 630 WP_000015937.1 guanylate kinase -
  NIH92_RS08720 (NIH92_08720) ispH 1812248..1813198 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIH92_RS08725 (NIH92_08725) fimU 1813368..1813841 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  NIH92_RS08730 (NIH92_08730) pilV 1813835..1814395 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  NIH92_RS08735 (NIH92_08735) pilW 1814396..1815397 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  NIH92_RS08740 (NIH92_08740) pilX 1815394..1816212 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=703243 NIH92_RS08725 WP_001214061.1 1813368..1813841(+) (fimU) [Acinetobacter baumannii strain KBN10P04593]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=703243 NIH92_RS08725 WP_001214061.1 1813368..1813841(+) (fimU) [Acinetobacter baumannii strain KBN10P04593]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987