Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NIY03_RS10560 Genome accession   NZ_CP099855
Coordinates   2190504..2190884 (-) Length   126 a.a.
NCBI ID   WP_000836915.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978R     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2185504..2195884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS10530 (NIY03_10530) tadA 2185623..2186126 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  NIY03_RS10535 (NIY03_10535) - 2186133..2187257 (-) 1125 WP_000982062.1 enoyl-CoA hydratase/isomerase family protein -
  NIY03_RS10540 (NIY03_10540) ung 2187254..2187967 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  NIY03_RS10545 (NIY03_10545) - 2188018..2188614 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  NIY03_RS10550 (NIY03_10550) gspK 2188844..2189803 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  NIY03_RS10555 (NIY03_10555) xcpW 2189803..2190504 (-) 702 WP_000594584.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NIY03_RS10560 (NIY03_10560) xcpV 2190504..2190884 (-) 381 WP_000836915.1 type II secretion system minor pseudopilin GspI Machinery gene
  NIY03_RS10565 (NIY03_10565) - 2190874..2191428 (-) 555 WP_000841375.1 type II secretion system protein -
  NIY03_RS10570 (NIY03_10570) - 2191438..2192046 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  NIY03_RS10575 (NIY03_10575) - 2192084..2192857 (-) 774 WP_000497298.1 TatD family hydrolase -
  NIY03_RS10580 (NIY03_10580) - 2192875..2193216 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  NIY03_RS10585 (NIY03_10585) - 2193228..2194208 (-) 981 WP_001075412.1 DNA polymerase III subunit delta' -
  NIY03_RS10590 (NIY03_10590) kdsB 2194220..2194981 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=701901 NIY03_RS10560 WP_000836915.1 2190504..2190884(-) (xcpV) [Acinetobacter baumannii strain 17978R]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=701901 NIY03_RS10560 WP_000836915.1 2190504..2190884(-) (xcpV) [Acinetobacter baumannii strain 17978R]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

98.413

100

0.984