Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NF322_RS07710 | Genome accession | NZ_CP098816 |
| Coordinates | 1594386..1595438 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis strain LZD8_nano | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1592826..1656510 | 1594386..1595438 | within | 0 |
Gene organization within MGE regions
Location: 1592826..1656510
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF322_RS07710 (NF322_07715) | recA | 1594386..1595438 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| NF322_RS07715 (NF322_07720) | - | 1595607..1596755 (-) | 1149 | WP_030064817.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| NF322_RS07720 (NF322_07725) | pgsA | 1596897..1597478 (-) | 582 | WP_002469863.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| NF322_RS07725 (NF322_07730) | - | 1597506..1597898 (-) | 393 | WP_030064815.1 | helix-turn-helix domain-containing protein | - |
| NF322_RS07730 (NF322_07735) | - | 1597917..1598744 (-) | 828 | WP_030064813.1 | YmfK family protein | - |
| NF322_RS07735 (NF322_07740) | - | 1598902..1599609 (-) | 708 | WP_023350378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| NF322_RS07740 (NF322_07745) | - | 1599609..1600895 (-) | 1287 | WP_030064811.1 | pitrilysin family protein | - |
| NF322_RS07745 (NF322_07750) | - | 1600895..1602169 (-) | 1275 | WP_030064809.1 | pitrilysin family protein | - |
| NF322_RS07750 (NF322_07755) | - | 1602211..1602921 (-) | 711 | WP_002436349.1 | GntR family transcriptional regulator | - |
| NF322_RS07755 (NF322_07760) | - | 1602924..1605344 (-) | 2421 | WP_023350382.1 | DNA translocase FtsK | - |
| NF322_RS07760 (NF322_07765) | - | 1605602..1607275 (-) | 1674 | WP_002469869.1 | ribonuclease J | - |
| NF322_RS07765 (NF322_07770) | pnp | 1607509..1609608 (-) | 2100 | WP_030064806.1 | polyribonucleotide nucleotidyltransferase | - |
| NF322_RS07770 (NF322_07775) | rpsO | 1609926..1610195 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| NF322_RS07775 (NF322_07780) | ribF | 1610317..1611288 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| NF322_RS07780 (NF322_07785) | truB | 1611304..1612221 (-) | 918 | WP_002436304.1 | tRNA pseudouridine(55) synthase TruB | - |
| NF322_RS07785 (NF322_07790) | rbfA | 1612370..1612720 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| NF322_RS07790 (NF322_07795) | infB | 1612877..1615042 (-) | 2166 | WP_030064804.1 | translation initiation factor IF-2 | - |
| NF322_RS07795 (NF322_07800) | - | 1615047..1615364 (-) | 318 | WP_030064802.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| NF322_RS07800 (NF322_07805) | - | 1615361..1615645 (-) | 285 | WP_002436310.1 | YlxR family protein | - |
| NF322_RS07805 (NF322_07810) | nusA | 1615662..1616885 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| NF322_RS07810 (NF322_07815) | rimP | 1616906..1617373 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| NF322_RS07815 (NF322_07820) | - | 1617599..1621909 (-) | 4311 | WP_096389449.1 | PolC-type DNA polymerase III | - |
| NF322_RS07820 (NF322_07825) | - | 1622165..1623868 (-) | 1704 | WP_030064798.1 | proline--tRNA ligase | - |
| NF322_RS07825 (NF322_07830) | rseP | 1623888..1625174 (-) | 1287 | WP_030064796.1 | RIP metalloprotease RseP | - |
| NF322_RS07830 (NF322_07835) | - | 1625414..1626196 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| NF322_RS07835 (NF322_07840) | - | 1626200..1626970 (-) | 771 | WP_002436351.1 | isoprenyl transferase | - |
| NF322_RS07840 (NF322_07845) | frr | 1627251..1627805 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| NF322_RS07845 (NF322_07850) | pyrH | 1627823..1628545 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| NF322_RS07850 (NF322_07855) | tsf | 1628682..1629560 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| NF322_RS07855 (NF322_07860) | rpsB | 1629711..1630499 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| NF322_RS07860 (NF322_07865) | codY | 1630752..1631525 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| NF322_RS07865 (NF322_07870) | hslU | 1631548..1632951 (-) | 1404 | WP_002436320.1 | ATP-dependent protease ATPase subunit HslU | - |
| NF322_RS07870 (NF322_07875) | hslV | 1633035..1633577 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| NF322_RS07875 (NF322_07880) | xerC | 1633581..1634471 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| NF322_RS07880 (NF322_07885) | trmFO | 1634708..1636015 (-) | 1308 | WP_030064791.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| NF322_RS07885 (NF322_07890) | topA | 1636041..1638116 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| NF322_RS07890 (NF322_07895) | dprA | 1638294..1639166 (-) | 873 | WP_002436358.1 | DNA-processing protein DprA | Machinery gene |
| NF322_RS07895 (NF322_07900) | sucD | 1639392..1640300 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| NF322_RS07900 (NF322_07905) | sucC | 1640322..1641488 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| NF322_RS07905 (NF322_07910) | - | 1641596..1642366 (-) | 771 | WP_030064786.1 | ribonuclease HII | - |
| NF322_RS07910 (NF322_07915) | ylqF | 1642350..1643233 (-) | 884 | Protein_1521 | ribosome biogenesis GTPase YlqF | - |
| NF322_RS07915 (NF322_07920) | - | 1643513..1646113 (+) | 2601 | WP_030064782.1 | YfhO family protein | - |
| NF322_RS07920 (NF322_07925) | - | 1646106..1648718 (+) | 2613 | WP_030064780.1 | YfhO family protein | - |
| NF322_RS07925 (NF322_07930) | - | 1649191..1649397 (+) | 207 | WP_227959510.1 | hypothetical protein | - |
| NF322_RS07930 (NF322_07935) | - | 1649437..1649775 (+) | 339 | WP_030064776.1 | hypothetical protein | - |
| NF322_RS07935 (NF322_07940) | rplS | 1650352..1650702 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| NF322_RS07940 (NF322_07945) | trmD | 1650808..1651545 (-) | 738 | WP_030064770.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| NF322_RS07945 (NF322_07950) | rimM | 1651545..1652048 (-) | 504 | WP_030064768.1 | ribosome maturation factor RimM | - |
| NF322_RS07950 (NF322_07955) | rpsP | 1652311..1652586 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| NF322_RS07955 (NF322_07960) | ffh | 1653010..1654377 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| NF322_RS07960 (NF322_07965) | - | 1654407..1654739 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| NF322_RS07965 (NF322_07970) | ftsY | 1654726..1655985 (-) | 1260 | WP_030064764.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=698157 NF322_RS07710 WP_002437037.1 1594386..1595438(-) (recA) [Staphylococcus capitis strain LZD8_nano]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=698157 NF322_RS07710 WP_002437037.1 1594386..1595438(-) (recA) [Staphylococcus capitis strain LZD8_nano]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGATATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGATATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.