Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPYKS030_RS01380 Genome accession   NZ_AP018337
Coordinates   252281..253207 (+) Length   308 a.a.
NCBI ID   WP_011054187.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain KS030     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 247281..258207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYKS030_RS01370 (SPYKS030_02220) amiA 248744..250714 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  SPYKS030_RS01375 (SPYKS030_02230) amiC 250779..252281 (+) 1503 WP_011054186.1 ABC transporter permease Regulator
  SPYKS030_RS01380 (SPYKS030_02240) amiD 252281..253207 (+) 927 WP_011054187.1 oligopeptide ABC transporter permease OppC Regulator
  SPYKS030_RS01385 (SPYKS030_02250) amiE 253216..254286 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  SPYKS030_RS01390 (SPYKS030_02260) amiF 254279..255202 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  SPYKS030_RS10445 - 255240..255329 (-) 90 WP_109821088.1 IS3 family transposase -
  SPYKS030_RS10130 (SPYKS030_02270) - 255350..255595 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34890.86 Da        Isoelectric Point: 8.5670

>NTDB_id=68978 SPYKS030_RS01380 WP_011054187.1 252281..253207(+) (amiD) [Streptococcus pyogenes strain KS030]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKVFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=68978 SPYKS030_RS01380 WP_011054187.1 252281..253207(+) (amiD) [Streptococcus pyogenes strain KS030]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGTATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment