Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATE38_RS11740 Genome accession   NZ_AP017377
Coordinates   2240873..2241268 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain OC8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2235873..2246268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS11715 thiE 2236473..2237114 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ATE38_RS11720 thiM 2237116..2237907 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  ATE38_RS11725 thiD 2237891..2238721 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ATE38_RS11730 tenA 2238714..2239403 (-) 690 WP_000396077.1 thiaminase II -
  ATE38_RS11735 sceD 2239789..2240484 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  ATE38_RS11740 ssb 2240873..2241268 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ATE38_RS11745 - 2241462..2241902 (+) 441 WP_000846746.1 YwpF-like family protein -
  ATE38_RS11750 fabZ 2241961..2242401 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ATE38_RS11755 murA 2242435..2243700 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ATE38_RS11760 - 2243811..2244044 (-) 234 WP_000384523.1 DUF1146 family protein -
  ATE38_RS11765 - 2244176..2244268 (-) 93 WP_001790611.1 hypothetical protein -
  ATE38_RS11770 - 2244606..2245010 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=67885 ATE38_RS11740 WP_000932694.1 2240873..2241268(-) (ssb) [Staphylococcus aureus strain OC8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=67885 ATE38_RS11740 WP_000932694.1 2240873..2241268(-) (ssb) [Staphylococcus aureus strain OC8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment