Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAFDA_RS10195 | Genome accession | NZ_AP014942 |
| Coordinates | 2029866..2030336 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934769.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain FDA209P | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1998865..2056496 | 2029866..2030336 | within | 0 |
Gene organization within MGE regions
Location: 1998865..2056496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAFDA_RS09970 (SAFDA_1832) | scn | 1998865..1999215 (-) | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
| SAFDA_RS14975 (SAFDA_1833) | - | 1999725..2000063 (-) | 339 | Protein_1892 | SH3 domain-containing protein | - |
| SAFDA_RS09980 (SAFDA_1834) | sak | 2000712..2001203 (-) | 492 | WP_000920041.1 | staphylokinase | - |
| SAFDA_RS09985 (SAFDA_1835) | - | 2001394..2002149 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| SAFDA_RS09990 (SAFDA_1836) | - | 2002161..2002415 (-) | 255 | WP_000611512.1 | phage holin | - |
| SAFDA_RS09995 | - | 2002467..2002574 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| SAFDA_RS14645 (SAFDA_1837) | pepG1 | 2002627..2002761 (-) | 135 | WP_000880502.1 | type I toxin-antitoxin system toxin PepG1 | - |
| SAFDA_RS10000 (SAFDA_1838) | - | 2002946..2003320 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| SAFDA_RS10005 (SAFDA_1839) | - | 2003376..2003663 (-) | 288 | WP_001262620.1 | hypothetical protein | - |
| SAFDA_RS10010 (SAFDA_1840) | - | 2003709..2003861 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| SAFDA_RS10015 (SAFDA_1841) | - | 2003854..2007636 (-) | 3783 | WP_042727565.1 | phage tail spike protein | - |
| SAFDA_RS10020 (SAFDA_1842) | - | 2007652..2009142 (-) | 1491 | WP_001154317.1 | phage distal tail protein | - |
| SAFDA_RS10025 (SAFDA_1843) | - | 2009142..2013791 (-) | 4650 | WP_042727566.1 | phage tail tape measure protein | - |
| SAFDA_RS10030 (SAFDA_1844) | gpGT | 2013847..2013969 (-) | 123 | WP_000570353.1 | phage tail assembly chaperone GT | - |
| SAFDA_RS10035 (SAFDA_1845) | gpG | 2014029..2014475 (-) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| SAFDA_RS10040 (SAFDA_1846) | - | 2014540..2015493 (-) | 954 | WP_000570652.1 | major tail protein | - |
| SAFDA_RS10045 (SAFDA_1847) | - | 2015494..2015874 (-) | 381 | WP_000611452.1 | hypothetical protein | - |
| SAFDA_RS10050 (SAFDA_1848) | - | 2015871..2016248 (-) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| SAFDA_RS10055 (SAFDA_1849) | - | 2016248..2016583 (-) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| SAFDA_RS10060 (SAFDA_1850) | - | 2016570..2016902 (-) | 333 | WP_001177483.1 | head-tail connector protein | - |
| SAFDA_RS10065 (SAFDA_1851) | - | 2016911..2017069 (-) | 159 | WP_001252099.1 | hypothetical protein | - |
| SAFDA_RS10070 (SAFDA_1852) | - | 2017105..2018352 (-) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| SAFDA_RS10075 (SAFDA_1853) | - | 2018440..2019024 (-) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| SAFDA_RS10080 (SAFDA_1854) | - | 2019017..2020267 (-) | 1251 | WP_000511068.1 | phage portal protein | - |
| SAFDA_RS10085 (SAFDA_1855) | - | 2020273..2020473 (-) | 201 | WP_001836552.1 | hypothetical protein | - |
| SAFDA_RS10090 (SAFDA_1856) | - | 2020487..2022181 (-) | 1695 | WP_000133306.1 | terminase large subunit | - |
| SAFDA_RS10095 (SAFDA_1857) | - | 2022184..2022651 (-) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| SAFDA_RS10100 (SAFDA_1858) | - | 2022781..2023125 (-) | 345 | WP_000817289.1 | HNH endonuclease | - |
| SAFDA_RS10105 (SAFDA_1859) | - | 2023141..2023593 (-) | 453 | WP_000406187.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| SAFDA_RS10110 (SAFDA_1860) | - | 2023708..2024169 (-) | 462 | WP_000282753.1 | hypothetical protein | - |
| SAFDA_RS10120 (SAFDA_1861) | - | 2024192..2024392 (-) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| SAFDA_RS10125 (SAFDA_1862) | - | 2024392..2025042 (-) | 651 | WP_001005262.1 | hypothetical protein | - |
| SAFDA_RS10130 (SAFDA_1863) | rinB | 2025201..2025350 (-) | 150 | WP_000595267.1 | transcriptional activator RinB | - |
| SAFDA_RS10135 (SAFDA_1864) | - | 2025347..2025553 (-) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| SAFDA_RS10140 (SAFDA_1865) | - | 2025590..2026126 (-) | 537 | WP_000185669.1 | dUTP diphosphatase | - |
| SAFDA_RS10145 (SAFDA_1866) | - | 2026119..2026367 (-) | 249 | WP_001065083.1 | DUF1024 family protein | - |
| SAFDA_RS10150 (SAFDA_1867) | - | 2026360..2026644 (-) | 285 | WP_001105621.1 | hypothetical protein | - |
| SAFDA_RS10155 (SAFDA_1868) | - | 2026641..2027090 (-) | 450 | WP_000982708.1 | YopX family protein | - |
| SAFDA_RS15200 | - | 2027087..2027281 (-) | 195 | WP_000983954.1 | hypothetical protein | - |
| SAFDA_RS10165 (SAFDA_1869) | - | 2027278..2027664 (-) | 387 | WP_000693615.1 | hypothetical protein | - |
| SAFDA_RS10170 (SAFDA_1870) | - | 2027678..2027920 (-) | 243 | WP_000131377.1 | phi PVL orf 51-like protein | - |
| SAFDA_RS10175 (SAFDA_1871) | - | 2027924..2028292 (-) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| SAFDA_RS10180 (SAFDA_1872) | - | 2028305..2028709 (-) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SAFDA_RS10185 (SAFDA_1873) | - | 2028718..2028936 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| SAFDA_RS10190 (SAFDA_1874) | - | 2028943..2029836 (-) | 894 | WP_000148329.1 | DnaD domain protein | - |
| SAFDA_RS10195 (SAFDA_1875) | ssbA | 2029866..2030336 (-) | 471 | WP_000934769.1 | single-stranded DNA-binding protein | Machinery gene |
| SAFDA_RS10200 (SAFDA_1876) | - | 2030337..2030954 (-) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| SAFDA_RS10205 (SAFDA_1877) | - | 2031035..2031955 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| SAFDA_RS10210 (SAFDA_1878) | - | 2031957..2033912 (-) | 1956 | WP_001813910.1 | AAA family ATPase | - |
| SAFDA_RS10215 | - | 2033909..2034172 (-) | 264 | WP_042727568.1 | hypothetical protein | - |
| SAFDA_RS10220 (SAFDA_1879) | - | 2034181..2034441 (-) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| SAFDA_RS10225 | - | 2034534..2034695 (-) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| SAFDA_RS10230 (SAFDA_1880) | - | 2034692..2035012 (-) | 321 | WP_001798161.1 | DUF771 domain-containing protein | - |
| SAFDA_RS10235 (SAFDA_1881) | - | 2035071..2035298 (+) | 228 | WP_000801108.1 | hypothetical protein | - |
| SAFDA_RS10240 (SAFDA_1882) | - | 2035300..2035491 (-) | 192 | WP_000389906.1 | hypothetical protein | - |
| SAFDA_RS10245 (SAFDA_1883) | - | 2035541..2035897 (+) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| SAFDA_RS10250 (SAFDA_1884) | - | 2035892..2036086 (-) | 195 | WP_001148859.1 | hypothetical protein | - |
| SAFDA_RS10255 (SAFDA_1885) | - | 2036102..2036890 (-) | 789 | WP_001148565.1 | phage antirepressor | - |
| SAFDA_RS10260 (SAFDA_1886) | - | 2036906..2037148 (-) | 243 | WP_000639922.1 | DUF739 family protein | - |
| SAFDA_RS10265 (SAFDA_1887) | - | 2037312..2038028 (+) | 717 | WP_001083967.1 | LexA family transcriptional regulator | - |
| SAFDA_RS10270 (SAFDA_1888) | - | 2038040..2038897 (+) | 858 | WP_000804508.1 | HIRAN domain-containing protein | - |
| SAFDA_RS10275 (SAFDA_1889) | - | 2038942..2039124 (+) | 183 | WP_000705243.1 | hypothetical protein | - |
| SAFDA_RS10280 (SAFDA_1890) | - | 2039160..2039306 (+) | 147 | WP_001013104.1 | hypothetical protein | - |
| SAFDA_RS10285 (SAFDA_1891) | - | 2039303..2039917 (-) | 615 | WP_000191459.1 | hypothetical protein | - |
| SAFDA_RS10290 (SAFDA_1892) | - | 2040025..2041062 (+) | 1038 | WP_000857176.1 | tyrosine-type recombinase/integrase | - |
| SAFDA_RS10295 (SAFDA_1893) | sph | 2041119..2041943 (+) | 825 | Protein_1956 | sphingomyelin phosphodiesterase | - |
| SAFDA_RS10300 (SAFDA_1894) | lukG | 2042181..2043197 (-) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| SAFDA_RS10305 (SAFDA_1895) | lukH | 2043219..2044271 (-) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| SAFDA_RS10310 (SAFDA_1896) | - | 2044706..2045929 (+) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| SAFDA_RS10315 (SAFDA_1897) | - | 2046301..2047146 (-) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| SAFDA_RS10320 (SAFDA_1898) | - | 2047208..2048119 (-) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| SAFDA_RS10325 (SAFDA_1899) | - | 2048280..2049587 (+) | 1308 | WP_001045078.1 | TrkH family potassium uptake protein | - |
| SAFDA_RS10330 (SAFDA_1900) | - | 2050159..2050785 (-) | 627 | WP_000216894.1 | hypothetical protein | - |
| SAFDA_RS10335 | - | 2050782..2050961 (-) | 180 | WP_000201397.1 | hypothetical protein | - |
| SAFDA_RS10340 (SAFDA_1901) | groL | 2051495..2053111 (-) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| SAFDA_RS10345 (SAFDA_1902) | groES | 2053187..2053471 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| SAFDA_RS10350 (SAFDA_1903) | mroQ | 2053646..2054389 (+) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| SAFDA_RS10355 (SAFDA_1904) | - | 2054414..2055673 (-) | 1260 | WP_000120323.1 | SdrH family protein | - |
| SAFDA_RS10360 (SAFDA_1905) | - | 2055870..2056496 (+) | 627 | WP_000522384.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17671.55 Da Isoelectric Point: 5.2672
>NTDB_id=67500 SAFDA_RS10195 WP_000934769.1 2029866..2030336(-) (ssbA) [Staphylococcus aureus strain FDA209P]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=67500 SAFDA_RS10195 WP_000934769.1 2029866..2030336(-) (ssbA) [Staphylococcus aureus strain FDA209P]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |