Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA92_RS10940 Genome accession   NZ_CP094721
Coordinates   2201953..2202462 (-) Length   169 a.a.
NCBI ID   WP_262559848.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2196953..2207462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS10925 (MUA92_10915) - 2197935..2199110 (+) 1176 WP_262559839.1 M20 family metallopeptidase -
  MUA92_RS10930 (MUA92_10920) - 2199155..2200546 (-) 1392 WP_262559840.1 MFS transporter -
  MUA92_RS10935 (MUA92_10925) rpsR 2201662..2201904 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA92_RS10940 (MUA92_10930) ssbA 2201953..2202462 (-) 510 WP_262559848.1 single-stranded DNA-binding protein Machinery gene
  MUA92_RS10945 (MUA92_10935) rpsF 2202488..2202784 (-) 297 WP_044360075.1 30S ribosomal protein S6 -
  MUA92_RS10950 (MUA92_10940) ychF 2203084..2204181 (-) 1098 WP_262559849.1 redox-regulated ATPase YchF -
  MUA92_RS10955 (MUA92_10945) - 2204181..2204393 (-) 213 WP_262559850.1 DUF951 domain-containing protein -
  MUA92_RS10960 (MUA92_10950) - 2204415..2205302 (-) 888 WP_262615551.1 mechanosensitive ion channel family protein -
  MUA92_RS10965 (MUA92_10955) - 2205332..2206144 (-) 813 WP_262559855.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18827.51 Da        Isoelectric Point: 5.7486

>NTDB_id=671248 MUA92_RS10940 WP_262559848.1 2201953..2202462(-) (ssbA) [Staphylococcus sp. IVB6227]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQNSPNHGNDFQSYGQSFGGQQQGQNSSYQNNQSPRNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=671248 MUA92_RS10940 WP_262559848.1 2201953..2202462(-) (ssbA) [Staphylococcus sp. IVB6227]
ATGATTAACAGAGTTGTATTAGTAGGTCGATTAACAAAAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTCGCAGTGAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGATTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGATGGTCGCTTACAGTCACGC
AGTTACGAAAACCAAGAAGGCCGACGCGTCTATGTCACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAGCCAAAATC
AGCGAATCAACGACACGCACAAAATAGTCCAAACCATGGAAACGACTTCCAAAGTTATGGACAAAGTTTCGGTGGACAAC
AGCAAGGCCAAAATTCGTCATATCAAAACAATCAGTCACCACGTAATGACAACCCATTTGCGAATGCGAACGGGCCAATA
GACATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.068

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

34.595

100

0.379