Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA88_RS04780 Genome accession   NZ_CP094718
Coordinates   967740..968789 (+) Length   349 a.a.
NCBI ID   WP_262604970.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 962740..973789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS04755 (MUA88_04745) - 963514..964215 (+) 702 WP_262605885.1 SDR family oxidoreductase -
  MUA88_RS04760 (MUA88_04750) - 964262..965095 (+) 834 WP_262604966.1 YmfK family protein -
  MUA88_RS04765 (MUA88_04755) - 965112..965507 (+) 396 WP_262605886.1 helix-turn-helix domain-containing protein -
  MUA88_RS04770 (MUA88_04760) pgsA 965547..966131 (+) 585 WP_262605887.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA88_RS04775 (MUA88_04765) - 966373..967533 (+) 1161 WP_262604969.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA88_RS04780 (MUA88_04770) recA 967740..968789 (+) 1050 WP_262604970.1 recombinase RecA Machinery gene
  MUA88_RS04785 (MUA88_04775) rny 969092..970651 (+) 1560 WP_262604971.1 ribonuclease Y -
  MUA88_RS04790 (MUA88_04780) - 970789..971166 (+) 378 WP_262604972.1 metalloregulator ArsR/SmtB family transcription factor -
  MUA88_RS04795 (MUA88_04785) - 971153..973303 (+) 2151 WP_262605888.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37681.65 Da        Isoelectric Point: 5.0815

>NTDB_id=671130 MUA88_RS04780 WP_262604970.1 967740..968789(+) (recA) [Staphylococcus sp. IVB6240]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKDRNVSTISTGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAESFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISRQGELIDLGVAHDIVDKSGAWYSYNGERMGQGKENVKLFLKENPALEAEIDQ
KLREKLGIAGDSEVEAEDQTEEADTLFDA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=671130 MUA88_RS04780 WP_262604970.1 967740..968789(+) (recA) [Staphylococcus sp. IVB6240]
TTGGATAATGAACGTCAGAAAGCACTAGATACAGTAATCAAAAATATGGAAAAGTCATTCGGGAAAGGTGCGGTTATGAA
GTTGGGTGACAACAAAGACCGTAACGTATCAACGATCTCAACAGGATCAGTAACCTTAGACCACGCACTAGGAGTAGGTG
GCTACCCGAAAGGACGTATCATTGAAGTTTATGGACCAGAGAGTTCTGGTAAAACAACAGTTGCCTTACATGCCATAGCT
GAAGTACAAAAAAATGGTGGGGTAGCAGCATTTATCGATGCCGAGCATGCATTAGACCCAGTTTATGCAGAGGCGTTAGG
TGTTGATATTAATAACCTATATCTTTCACAACCCGATCACGGGGAACAAGGTTTAGAGATTGCAGAATCCTTTGTTCGTA
GTGGTGCTGTCGATATTGTTGTTGTCGACTCAGTAGCAGCATTAACACCAAAAGCTGAAATTGAAGGCGAAATGGGAGAT
ACGCATGTTGGTTTACAAGCACGTTTAATGTCACAAGCATTGCGTAAACTATCAGCAGCAATCTCAAAATCTAAAACAAC
AGCTATCTTTATTAACCAAATTCGTGAAAAAGTAGGTGTTATGTTCGGTAATCCTGAAACAACACCAGGGGGACGTGCCT
TAAAATTCTATAGCTCTGTTCGTTTAGAAGTAAGACGTGCCGAACAGTTGAAGCAAGGGCAAGATATAGTTGGTAACCGT
ACAAAAATTAAAGTTGTAAAAAATAAGGTAGCACCACCATTCAAAGTGGCTGAGGTAGATATTATGTACGGACAAGGTAT
CTCTCGCCAAGGTGAGTTAATCGACTTGGGTGTTGCGCATGATATTGTAGATAAATCTGGTGCATGGTATTCATATAATG
GAGAACGTATGGGCCAAGGTAAAGAAAATGTAAAACTGTTCTTAAAAGAGAATCCAGCTTTAGAAGCGGAAATTGATCAA
AAGCTACGTGAAAAATTAGGCATCGCTGGTGATTCAGAAGTTGAGGCTGAAGATCAAACAGAAGAAGCAGATACATTATT
TGATGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.41

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

70.833

96.275

0.682
  recA Streptococcus pyogenes NZ131

68.997

94.269

0.65
  recA Streptococcus mutans UA159

65.13

99.427

0.648
  recA Streptococcus mitis SK321

65.306

98.281

0.642
  recA Streptococcus mitis NCTC 12261

64.826

98.567

0.639
  recA Streptococcus pneumoniae TIGR4

64.638

98.854

0.639
  recA Streptococcus pneumoniae Rx1

64.638

98.854

0.639
  recA Streptococcus pneumoniae D39

64.638

98.854

0.639
  recA Streptococcus pneumoniae R6

64.638

98.854

0.639
  recA Lactococcus lactis subsp. cremoris KW2

65.075

95.989

0.625
  recA Acinetobacter baumannii D1279779

62.286

100

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.265

98.281

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.605

100

0.616
  recA Vibrio cholerae strain A1552

61.605

100

0.616
  recA Acinetobacter baylyi ADP1

61.605

100

0.616
  recA Neisseria gonorrhoeae strain FA1090

64.742

94.269

0.61
  recA Neisseria gonorrhoeae MS11

64.742

94.269

0.61
  recA Neisseria gonorrhoeae MS11

64.742

94.269

0.61
  recA Helicobacter pylori 26695

64.329

93.983

0.605
  recA Helicobacter pylori strain NCTC11637

64.329

93.983

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

94.842

0.59
  recA Ralstonia pseudosolanacearum GMI1000

62.691

93.696

0.587
  recA Pseudomonas stutzeri DSM 10701

61.043

93.41

0.57
  recA Glaesserella parasuis strain SC1401

58.017

98.281

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

91.691

0.564