Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MT995_RS02765 | Genome accession | NZ_CP094663 |
| Coordinates | 561946..562416 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 494 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 547209..595159 | 561946..562416 | within | 0 |
Gene organization within MGE regions
Location: 547209..595159
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT995_RS02655 (MT995_02655) | - | 547209..548135 (-) | 927 | WP_000757575.1 | glycerophosphodiester phosphodiesterase | - |
| MT995_RS02660 (MT995_02660) | - | 548374..548628 (+) | 255 | WP_001049150.1 | YlbG family protein | - |
| MT995_RS02665 (MT995_02665) | - | 548631..549020 (-) | 390 | WP_000814565.1 | hypothetical protein | - |
| MT995_RS02670 (MT995_02670) | rsmD | 549090..549632 (+) | 543 | WP_001263803.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| MT995_RS02675 (MT995_02675) | coaD | 549634..550116 (+) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| MT995_RS02680 (MT995_02680) | - | 550178..551317 (-) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
| MT995_RS02685 (MT995_02685) | - | 551444..552001 (+) | 558 | WP_000872158.1 | DUF177 domain-containing protein | - |
| MT995_RS02690 (MT995_02690) | rpmF | 552081..552254 (+) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| MT995_RS02695 (MT995_02695) | - | 552371..553756 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| MT995_RS02700 (MT995_02700) | - | 553814..554743 (-) | 930 | WP_001253415.1 | DUF5067 domain-containing protein | - |
| MT995_RS02705 (MT995_02705) | - | 554761..555219 (-) | 459 | WP_000521395.1 | ImmA/IrrE family metallo-endopeptidase | - |
| MT995_RS02710 (MT995_02710) | - | 555241..555555 (-) | 315 | WP_001118607.1 | helix-turn-helix transcriptional regulator | - |
| MT995_RS02715 (MT995_02715) | - | 555708..555920 (+) | 213 | WP_000132644.1 | helix-turn-helix transcriptional regulator | - |
| MT995_RS02720 (MT995_02720) | - | 555997..556761 (+) | 765 | WP_001148560.1 | phage antirepressor | - |
| MT995_RS02725 (MT995_02725) | - | 556778..556972 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| MT995_RS02730 (MT995_02730) | - | 557176..557406 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| MT995_RS13860 | - | 557465..557593 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| MT995_RS02735 (MT995_02735) | - | 557586..557747 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| MT995_RS02740 (MT995_02740) | - | 557841..558101 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| MT995_RS02745 (MT995_02745) | - | 558110..558373 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| MT995_RS02750 (MT995_02750) | - | 558382..560325 (+) | 1944 | WP_000700567.1 | AAA family ATPase | - |
| MT995_RS02755 (MT995_02755) | - | 560327..561247 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| MT995_RS02760 (MT995_02760) | - | 561328..561945 (+) | 618 | WP_072460574.1 | MBL fold metallo-hydrolase | - |
| MT995_RS02765 (MT995_02765) | ssbA | 561946..562416 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| MT995_RS02770 (MT995_02770) | - | 562446..563330 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| MT995_RS02775 (MT995_02775) | - | 563337..563555 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| MT995_RS02780 (MT995_02780) | - | 563564..563968 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| MT995_RS02785 (MT995_02785) | - | 563981..564349 (+) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| MT995_RS02790 (MT995_02790) | - | 564353..564595 (+) | 243 | WP_000131395.1 | SAV1978 family virulence-associated passenger protein | - |
| MT995_RS02795 (MT995_02795) | - | 564608..565012 (+) | 405 | WP_000695752.1 | hypothetical protein | - |
| MT995_RS02800 (MT995_02800) | - | 565009..565374 (+) | 366 | WP_001105615.1 | hypothetical protein | - |
| MT995_RS02805 (MT995_02805) | - | 565367..565615 (+) | 249 | WP_001065072.1 | DUF1024 family protein | - |
| MT995_RS02810 (MT995_02810) | - | 565608..566144 (+) | 537 | WP_000185680.1 | dUTPase | - |
| MT995_RS02815 (MT995_02815) | - | 566181..566426 (+) | 246 | WP_000120373.1 | hypothetical protein | - |
| MT995_RS02820 (MT995_02820) | - | 566423..566611 (+) | 189 | WP_000195802.1 | DUF1381 domain-containing protein | - |
| MT995_RS02825 (MT995_02825) | - | 566586..566786 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| MT995_RS02830 (MT995_02830) | - | 566789..566962 (+) | 174 | WP_001806316.1 | transcriptional activator RinB | - |
| MT995_RS02835 (MT995_02835) | - | 566963..567109 (+) | 147 | WP_000989997.1 | hypothetical protein | - |
| MT995_RS02840 (MT995_02840) | - | 567124..567543 (+) | 420 | WP_000058633.1 | transcriptional regulator | - |
| MT995_RS02845 (MT995_02845) | - | 567730..568224 (+) | 495 | WP_001004406.1 | terminase small subunit | - |
| MT995_RS02850 (MT995_02850) | - | 568227..569522 (+) | 1296 | WP_031869843.1 | PBSX family phage terminase large subunit | - |
| MT995_RS02855 (MT995_02855) | - | 569533..571068 (+) | 1536 | WP_000921884.1 | phage portal protein | - |
| MT995_RS02860 (MT995_02860) | - | 571075..572070 (+) | 996 | WP_001806313.1 | minor capsid protein | - |
| MT995_RS02865 (MT995_02865) | - | 572143..572313 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| MT995_RS02870 (MT995_02870) | - | 572448..573062 (+) | 615 | WP_000354309.1 | DUF4355 domain-containing protein | - |
| MT995_RS02875 (MT995_02875) | - | 573076..574050 (+) | 975 | WP_000438508.1 | phage major capsid protein | - |
| MT995_RS02880 (MT995_02880) | - | 574072..574359 (+) | 288 | WP_001114090.1 | hypothetical protein | - |
| MT995_RS02885 (MT995_02885) | - | 574368..574700 (+) | 333 | WP_000208957.1 | phage head-tail connector protein | - |
| MT995_RS02890 (MT995_02890) | - | 574697..574999 (+) | 303 | WP_001270300.1 | hypothetical protein | - |
| MT995_RS02895 (MT995_02895) | - | 574999..575346 (+) | 348 | WP_001017810.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| MT995_RS02900 (MT995_02900) | - | 575358..575741 (+) | 384 | WP_000188655.1 | hypothetical protein | - |
| MT995_RS02905 (MT995_02905) | - | 575761..576342 (+) | 582 | WP_000002581.1 | phage major tail protein, TP901-1 family | - |
| MT995_RS02910 (MT995_02910) | - | 576405..576770 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| MT995_RS02915 (MT995_02915) | - | 576800..577144 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| MT995_RS02920 (MT995_02920) | - | 577161..580625 (+) | 3465 | WP_000141467.1 | hypothetical protein | - |
| MT995_RS02925 (MT995_02925) | - | 580638..581585 (+) | 948 | WP_000350684.1 | phage tail family protein | - |
| MT995_RS02930 (MT995_02930) | - | 581594..583495 (+) | 1902 | WP_000156405.1 | SGNH/GDSL hydrolase family protein | - |
| MT995_RS02935 (MT995_02935) | - | 583510..585420 (+) | 1911 | WP_000369026.1 | hypothetical protein | - |
| MT995_RS02940 (MT995_02940) | - | 585420..587243 (+) | 1824 | WP_000259602.1 | phage baseplate upper protein | - |
| MT995_RS02945 (MT995_02945) | - | 587243..587620 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| MT995_RS02950 (MT995_02950) | - | 587624..587797 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| MT995_RS02955 (MT995_02955) | - | 587837..588136 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| MT995_RS02960 (MT995_02960) | - | 588273..590171 (+) | 1899 | WP_000524015.1 | glucosaminidase domain-containing protein | - |
| MT995_RS02965 (MT995_02965) | - | 590184..591422 (+) | 1239 | WP_000276641.1 | BppU family phage baseplate upper protein | - |
| MT995_RS02970 (MT995_02970) | - | 591428..591823 (+) | 396 | WP_000398891.1 | hypothetical protein | - |
| MT995_RS02975 (MT995_02975) | - | 591881..592135 (+) | 255 | WP_000611512.1 | phage holin | - |
| MT995_RS02980 (MT995_02980) | - | 592147..592902 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| MT995_RS02985 (MT995_02985) | sak | 593093..593584 (+) | 492 | WP_000920041.1 | staphylokinase | - |
| MT995_RS02990 (MT995_02990) | - | 594120..594707 (+) | 588 | WP_000448197.1 | hypothetical protein | - |
| MT995_RS02995 (MT995_02995) | - | 594704..595159 (+) | 456 | WP_000971220.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=670544 MT995_RS02765 WP_000934770.1 561946..562416(+) (ssbA) [Staphylococcus aureus strain 494]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=670544 MT995_RS02765 WP_000934770.1 561946..562416(+) (ssbA) [Staphylococcus aureus strain 494]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |