Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MMY79_RS16425 Genome accession   NZ_CP094657
Coordinates   3544745..3545149 (-) Length   134 a.a.
NCBI ID   WP_252610300.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539745..3550149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS16395 (MMY79_16390) - 3539827..3540096 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  MMY79_RS16400 (MMY79_16395) rapZ 3540093..3540944 (-) 852 WP_004794551.1 RNase adapter RapZ -
  MMY79_RS16405 (MMY79_16400) panC 3540969..3541817 (-) 849 WP_252610292.1 pantoate--beta-alanine ligase -
  MMY79_RS16410 (MMY79_16405) panB 3541821..3542630 (-) 810 WP_252610294.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  MMY79_RS16415 (MMY79_16410) folK 3542677..3543159 (-) 483 WP_252610296.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  MMY79_RS16420 (MMY79_16415) pcnB 3543156..3544619 (-) 1464 WP_252610298.1 polynucleotide adenylyltransferase PcnB -
  MMY79_RS16425 (MMY79_16420) comEA 3544745..3545149 (-) 405 WP_252610300.1 ComEA family DNA-binding protein Machinery gene
  MMY79_RS16430 (MMY79_16425) mazG 3545118..3545924 (-) 807 WP_252610302.1 nucleoside triphosphate pyrophosphohydrolase -
  MMY79_RS16435 (MMY79_16430) - 3546037..3546810 (+) 774 WP_252610304.1 SDR family oxidoreductase -
  MMY79_RS16440 (MMY79_16435) - 3546859..3549165 (-) 2307 WP_252610306.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15422.67 Da        Isoelectric Point: 10.4153

>NTDB_id=670435 MMY79_RS16425 WP_252610300.1 3544745..3545149(-) (comEA) [Acinetobacter sp. XS-4]
MQLNMSLWKSKSYIFIILFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSNVSKSSNMTDASGQVHLNQAN
IEELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLSL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=670435 MMY79_RS16425 WP_252610300.1 3544745..3545149(-) (comEA) [Acinetobacter sp. XS-4]
ATGCAGCTAAACATGAGTCTTTGGAAGAGTAAGTCTTATATTTTTATTATTTTATTTTGGAGCCTGATTTCATCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACTCCTCTCATTCTAATGTTTCAAAAAGTTCAAACATGACTGATGCTTCAGGGCAAGTGCATTTAAACCAGGCTAAT
ATTGAGGAGCTTCAAAAGCTAAAAGGGATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATAGGTCCAGCCATTTTTGAAAAGAATAAAACGCGGTTGAGTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.883

100

0.694
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396