Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG896_RS26335 Genome accession   NZ_CP109018
Coordinates   6217107..6219329 (+) Length   740 a.a.
NCBI ID   WP_329369272.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6212107..6224329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recD/recD2/recDB 6217107..6219329 (+) 2223 - - Machinery gene

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79567.04 Da        Isoelectric Point: 6.8337

>NTDB_id=669345 OG896_RS26335 WP_329369272.1 6217107..6219329(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00669]
MGEAPHLSVLEGVLERITYANEDNGYTVARVDTGRGSGDLLTVVGALLGAQPGESLRMHGRWGSHPQYGKQFTVENYTTV
LPATIQGIRRYLGSGLIKGIGPRIAERIVDHFGTDTLEVIETEAARLVEVPGLGPKRTKLIAVAWEEQKAIKEVMVFLQG
VGVSTSIAVRIYKSYGDASISVVKNQPYRLASEVWGIGFLTADRLAQAVGIPHDSPERVKAGLQYALSQATDGGNCFLPE
ERLIADAVKLLQVDIGLVIECLGELADEEGVVRERVPSPDGDGEPIKAVYLVPFHRAEIALAAQVLRLLRGPEDRMPAFQ
DVAWDKALSWLADKTGADLAPEQQEAVRLALTQKVAVLTGGPGCGKSFTVRSVVALATAKKAKVVLAAPTGRAAKRLAEL
TGAAASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDL
LTPGGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPVTQGLADFFLFAEEDSEEAARLTVDVVARRIPARFGLDPRRDV
QVLTPMHRGPAGAGVLNGLLQQAVTPARPDVAERRFGGRTFRVGDKVTQIRNNYDKGANGVFNGTVGVVTSLDAVEQRLT
VRTDEDEEVGYDFDELDELTHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRAIGQAVR
TVSAGRRFTALDHRLDLGAK

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=669345 OG896_RS26335 WP_329369272.1 6217107..6219329(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00669]
ATGGGTGAGGCGCCGCACCTTTCGGTCCTGGAGGGCGTCCTCGAGCGGATCACGTACGCCAACGAGGACAACGGCTACAC
GGTCGCGCGCGTCGACACCGGCCGCGGTTCCGGCGATCTCCTCACGGTGGTCGGTGCCCTGCTCGGCGCACAGCCCGGCG
AGTCCCTGCGGATGCACGGCCGATGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACGACGGTC
CTGCCGGCCACGATCCAGGGCATTCGCCGCTACCTCGGCTCGGGGCTTATCAAGGGGATCGGGCCGCGCATCGCCGAGCG
CATCGTGGATCACTTCGGTACCGACACCCTGGAGGTCATCGAGACCGAGGCCGCCCGCCTGGTCGAGGTGCCAGGACTCG
GGCCGAAGCGGACGAAGTTGATCGCCGTCGCGTGGGAGGAGCAGAAGGCGATCAAGGAGGTGATGGTGTTCCTCCAGGGC
GTGGGGGTGTCCACGTCGATCGCCGTGCGGATCTACAAGAGTTACGGCGACGCCTCGATCTCCGTGGTGAAGAACCAGCC
GTATCGCCTTGCCTCCGAGGTGTGGGGCATCGGGTTCCTGACCGCAGACCGGCTCGCCCAGGCGGTGGGCATCCCGCACG
ACAGCCCTGAGCGGGTCAAGGCCGGTCTTCAGTACGCCCTTTCGCAGGCCACCGACGGCGGCAACTGCTTCCTGCCCGAG
GAGCGGCTGATAGCCGATGCGGTGAAGCTGCTCCAGGTGGACATCGGCCTGGTGATCGAGTGCCTGGGGGAGTTGGCCGA
CGAGGAGGGGGTGGTGCGTGAGCGCGTGCCGTCGCCCGACGGCGACGGCGAGCCGATCAAGGCGGTGTACCTGGTGCCGT
TCCATCGCGCGGAGATAGCGCTCGCCGCCCAGGTGCTGAGGCTGCTGCGCGGCCCGGAGGACCGTATGCCGGCCTTCCAG
GACGTGGCCTGGGACAAGGCGCTGTCCTGGCTCGCTGACAAGACCGGTGCGGATCTCGCCCCCGAGCAGCAGGAAGCGGT
GCGGTTGGCGCTCACGCAGAAAGTGGCGGTGCTCACCGGCGGTCCGGGCTGCGGCAAGTCGTTCACGGTGCGCTCAGTGG
TCGCCCTCGCCACGGCCAAGAAGGCCAAGGTGGTGCTTGCCGCGCCCACCGGCCGGGCTGCCAAGCGGCTCGCCGAGCTG
ACCGGAGCCGCCGCGTCGACCGTGCACCGCCTGCTGGAACTCAAGCCGGGCGGCGACGCGGCCTACGACCGCGACCGGCC
GCTCGACGCGGACCTGGTGGTGGTCGACGAGGCGTCGATGCTGGACCTGCTGCTGGCGAACAAGCTGGTGAAGGCGGTGC
CTCCGGGGGCGCACCTGCTGTTCGTCGGCGATGTGGACCAGCTGCCGAGCGTGGGCGCGGGGGAGGTGCTGCGGGATCTG
CTGACACCGGGCGGGCCGGTCCCGGCAGTGCGGCTCACCCGTATCTTCCGCCAGGCCCAGCAGTCCGGTGTGGTGACGAA
CGCGCACCGGATCAACTCCGGGGTGCCACCGGTCACCCAGGGGCTGGCCGATTTCTTCCTCTTCGCCGAAGAGGACTCGG
AGGAGGCGGCCAGGCTGACAGTGGACGTGGTGGCCCGGCGAATTCCGGCCAGGTTCGGTCTCGACCCGCGCCGCGACGTC
CAGGTGCTCACCCCCATGCACCGCGGCCCGGCCGGCGCGGGCGTGCTCAACGGACTGCTCCAGCAGGCCGTCACGCCGGC
TCGCCCCGATGTGGCCGAGCGCCGGTTCGGCGGGCGCACCTTCCGGGTCGGCGACAAGGTAACCCAGATCAGAAACAACT
ACGACAAGGGCGCCAACGGCGTCTTCAACGGCACCGTGGGGGTCGTCACCAGCCTCGACGCGGTCGAGCAGCGGCTGACG
GTGCGGACCGACGAGGACGAAGAGGTCGGCTACGACTTCGACGAGCTGGACGAGTTGACGCATGCCTACGCGGTCACGAT
CCACCGTTCGCAGGGCAGCGAGTATCCGGCAGTAGTGATCCCCGTCACTACCGGCGCCTGGATGATGCTCCAGCGCAACC
TGCTTTACACCGCCGTCACCCGGGCGAAACGCCTGGTCGTGCTGGTGGGCTCCCGTCGTGCGATCGGGCAGGCGGTGCGC
ACGGTCTCCGCGGGTCGCCGCTTCACCGCTCTCGACCATCGGCTTGATCTGGGCGCAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(339-517)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-709)

Helix-hairpin-helix domain (HHH_5)

(97-146)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(576-642)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.013

100

0.366