Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG67_RS00720 Genome accession   NZ_CP094156
Coordinates   150430..151173 (+) Length   247 a.a.
NCBI ID   WP_245072921.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145430..156173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG67_RS00695 (MPG67_00695) panD 147580..147930 (+) 351 WP_245050843.1 aspartate 1-decarboxylase -
  MPG67_RS00700 (MPG67_00700) - 147941..148234 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG67_RS00705 (MPG67_00705) - 148234..149229 (+) 996 WP_245073320.1 PDZ domain-containing protein -
  MPG67_RS00710 (MPG67_00710) comB6 149237..150292 (+) 1056 WP_245073322.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG67_RS00715 (MPG67_00715) comB7 150308..150433 (+) 126 WP_075668089.1 comB7 lipoprotein Machinery gene
  MPG67_RS00720 (MPG67_00720) comB8 150430..151173 (+) 744 WP_245072921.1 virB8 family protein Machinery gene
  MPG67_RS00725 (MPG67_00725) comB9 151173..152138 (+) 966 WP_245072922.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG67_RS00730 (MPG67_00730) comB10 152131..153267 (+) 1137 WP_245050853.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG67_RS00735 (MPG67_00735) - 153333..154745 (+) 1413 WP_245050855.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG67_RS00740 (MPG67_00740) gmd 154760..155905 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28724.97 Da        Isoelectric Point: 8.9266

>NTDB_id=667728 MPG67_RS00720 WP_245072921.1 150430..151173(+) (comB8) [Helicobacter pylori strain Hpfe005]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSYLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667728 MPG67_RS00720 WP_245072921.1 150430..151173(+) (comB8) [Helicobacter pylori strain Hpfe005]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTCTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCTATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment