Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG33_RS07290 Genome accession   NZ_CP094070
Coordinates   1524193..1524474 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe107     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519193..1529474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG33_RS07270 (MPG33_07270) - 1519903..1521243 (-) 1341 WP_245062649.1 hypothetical protein -
  MPG33_RS07280 (MPG33_07280) comB4 1521564..1523927 (-) 2364 WP_245062650.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG33_RS07285 (MPG33_07285) comB3 1523930..1524193 (-) 264 WP_021309156.1 hypothetical protein Machinery gene
  MPG33_RS07290 (MPG33_07290) comB2 1524193..1524474 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG33_RS07295 (MPG33_07295) - 1524619..1525446 (-) 828 WP_245062651.1 DUF5718 family protein -
  MPG33_RS07300 (MPG33_07300) - 1525537..1526589 (-) 1053 WP_015428478.1 MnmA/TRMU family protein -
  MPG33_RS07305 (MPG33_07305) dnaG 1526586..1528265 (-) 1680 WP_245062652.1 DNA primase -
  MPG33_RS07310 (MPG33_07310) groES 1528540..1528896 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666409 MPG33_RS07290 WP_001272686.1 1524193..1524474(-) (comB2) [Helicobacter pylori strain Hpfe107]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666409 MPG33_RS07290 WP_001272686.1 1524193..1524474(-) (comB2) [Helicobacter pylori strain Hpfe107]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989