Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG349_RS25240 Genome accession   NZ_CP108393
Coordinates   5810795..5812528 (-) Length   577 a.a.
NCBI ID   WP_327236759.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01317     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5805795..5817528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rcrP 5810795..5812528 (-) 1734 - - Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62486.58 Da        Isoelectric Point: 7.4422

>NTDB_id=660100 OG349_RS25240 WP_327236759.1 5810795..5812528(-) (rcrP) [Streptomyces sp. NBC_01317]
MLLRLLRTHLAPYKRAIGLLVALQLLQTVATLYLPTLNADIIDNGVVKGDTGYILRFGGIMIAVSVGQVICNIGAVYYGA
RTASALGRDVRAAVFGRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMSFTLMVSAPIMCVGGIIMALGQDVPLSSV
LLAVVPVLGISVSLIVRKMRPLFRTMQTRLDSVNRILREQITGNRVIRAFVRDDYEKKRFGEANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIESGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PEAPVTELRRHGHLEVRSGEFRFPGAEEPVLRDVSLVARPGETTAVIGSTGSGKSTLLSLVPRLIDTTGGEVLVDGQDVR
GLDPALLAKTVSLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQAKDFVSALEGGLNAAISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALARETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGSGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=660100 OG349_RS25240 WP_327236759.1 5810795..5812528(-) (rcrP) [Streptomyces sp. NBC_01317]
GTGCTGCTACGACTCCTGCGTACCCATCTCGCCCCGTACAAAAGAGCGATAGGTCTGCTGGTCGCGCTCCAGCTGCTCCA
GACCGTCGCCACCCTCTATCTGCCCACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGCGCTTCGGCGGGATCATGATCGCCGTCAGCGTCGGCCAGGTGATCTGCAACATCGGCGCGGTCTACTACGGCGCC
CGTACCGCCTCAGCGCTCGGCAGGGACGTCAGGGCCGCCGTATTCGGGCGGGTGCAGAGCTTCTCCGCCCGCGAGGTCGG
GCAGTTCGGGGCCCCGTCGCTGATCACGCGTACCACCAATGACGTGCAGCAGGTCCAGATGCTGACGCTGATGTCGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGTGTCGGGGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCGTCCGTG
CTGCTGGCCGTCGTGCCGGTGCTCGGGATCTCGGTGAGCCTCATCGTCAGGAAGATGCGGCCGCTCTTCCGGACCATGCA
GACCCGGCTGGACTCGGTGAACCGGATTCTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCGTTCGTCCGGGACG
ACTACGAGAAGAAGCGTTTCGGGGAAGCCAACACCGAGCTGACCGACGTCGCGCTGTCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACGGTCGTCAACGTCTCGTCGATCGCCGTCGTCTGGTTCGGGGCGCACCGCATCGAGAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCGGAGCGCATCGAGGAGGTGCTGGACACGCGGTCCAGCGTCGTACCG
CCGGAGGCTCCCGTGACGGAGCTGCGGCGGCACGGTCATCTGGAGGTACGGAGCGGGGAGTTCCGCTTCCCCGGGGCCGA
GGAGCCCGTGCTGAGGGACGTCTCGCTGGTGGCGCGCCCCGGCGAGACGACCGCCGTCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTGAGCCTGGTCCCCCGGCTGATCGACACCACCGGCGGGGAGGTGCTCGTGGACGGCCAGGACGTACGC
GGGCTCGATCCGGCGCTGTTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTGGCGAC
CAACCTGCGGTACGGCAAGCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCTCCGCGCTGGAGGGCGGCCTGAACGCCGCGATATCCCAGGGCGGTACGAACGTCTCCGGCGGGCAGCGCCAACGCCTG
GCCATCGCCAGGACGCTGGTGCAGCGGCCGGAGATATACCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGCGCGCGCTCGCGCGGGAGACCGCGGAGGCGACGGTCGTGATCGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCATCGTCCTGGACGAGGGCCGGGTGGTCGGCAGCGGCCGGCACCACGAGCTGATGGCGGGCAAC
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACCGAGGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.909

99.133

0.406