Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG349_RS04470 Genome accession   NZ_CP108393
Coordinates   1057816..1058685 (+) Length   289 a.a.
NCBI ID   WP_327233334.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01317     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052816..1063685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - amiE 1057816..1058685 (+) 870 - - Regulator

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 30524.16 Da        Isoelectric Point: 5.9662

>NTDB_id=660052 OG349_RS04470 WP_327233334.1 1057816..1058685(+) (amiE) [Streptomyces sp. NBC_01317]
MTAHVSPQDAGVPLLDVSNLQVELMTARGVVRAVDGVSFTVGEGETVTLIGESGSGKSTTAMGVLRLLPEGLAVLSGSVR
IAGQDIIADPEAARALRGRTVSLIPQDPMTALSPVHTVGRQLGDALRLRHPGLSRAEAREKGTDLLAQVRIPKPETRWKA
YPHQFSGGMLQRILIAVALAAGPRLLVADEPTSALDATVQAGVLDLLMELQEVEGIGMLMITHDLGVARVVSDRIHVMKE
GRFVESGPAERIVERPAEPYTRSLLAAVPRLGGWDEDALTGTAPRGVTG

Nucleotide


Download         Length: 870 bp        

>NTDB_id=660052 OG349_RS04470 WP_327233334.1 1057816..1058685(+) (amiE) [Streptomyces sp. NBC_01317]
ATGACCGCACACGTTTCCCCGCAGGACGCGGGCGTCCCGCTGCTGGACGTCTCGAACCTTCAGGTCGAGCTGATGACGGC
GCGCGGAGTGGTCCGCGCCGTGGACGGCGTGAGCTTCACGGTCGGTGAGGGGGAGACCGTGACCCTCATCGGCGAGTCGG
GCTCGGGGAAGTCGACCACCGCGATGGGGGTGCTGCGGCTGCTCCCCGAAGGGCTCGCCGTGCTCTCGGGGTCCGTACGG
ATCGCCGGCCAGGACATCATCGCCGACCCGGAGGCCGCCCGCGCCCTGCGCGGCCGGACCGTGTCGCTGATCCCGCAGGA
TCCGATGACGGCGCTCAGCCCCGTCCACACCGTCGGCCGCCAGCTCGGTGACGCGCTGCGGCTGCGCCATCCGGGCCTCT
CCCGGGCCGAGGCCAGGGAGAAGGGGACCGACCTGCTCGCCCAGGTCCGTATCCCGAAGCCGGAGACCCGCTGGAAGGCG
TATCCGCACCAGTTCTCCGGCGGCATGCTGCAACGGATCCTCATCGCCGTGGCGCTCGCCGCCGGGCCCCGGCTGCTGGT
CGCCGACGAGCCGACCTCGGCGCTGGACGCCACCGTGCAGGCGGGCGTCCTCGATCTGCTGATGGAGCTACAGGAAGTCG
AGGGGATCGGAATGCTGATGATCACCCATGATCTGGGGGTGGCACGCGTCGTGTCCGACCGTATCCATGTGATGAAGGAG
GGCCGGTTCGTGGAGTCGGGTCCCGCCGAGCGGATCGTCGAGCGCCCGGCCGAGCCGTACACCCGCTCCCTGCTCGCCGC
CGTCCCACGCCTCGGCGGCTGGGACGAGGACGCCCTGACCGGAACCGCGCCCCGGGGCGTGACCGGATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(244-284)

ABC transporter (ABC_tran)

(35-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

41.762

90.311

0.377
  amiE Streptococcus thermophilus LMG 18311

41.379

90.311

0.374
  amiE Streptococcus thermophilus LMD-9

41.379

90.311

0.374