Detailed information NTG0657005

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: MID02_RS01960
• Genome accession: NZ_CP092383
• Coordinates: 381848..382996 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SF327
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 376848..387996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID02_RS01940 (MID02_01940)	-	377245..377928 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
MID02_RS01945 (MID02_01945)	-	377943..379379 (-)	1437	WP_239819351.1	ABC transporter permease	-
MID02_RS01950 (MID02_01950)	-	379592..380275 (+)	684	WP_103695313.1	response regulator transcription factor	-
MID02_RS01955 (MID02_01955)	-	380262..381695 (+)	1434	WP_161620115.1	HAMP domain-containing sensor histidine kinase	-
MID02_RS01960 (MID02_01960)	rapC	381848..382996 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
MID02_RS01965 (MID02_01965)	phrC	382980..383099 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
MID02_RS01970 (MID02_01970)	-	383249..383344 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
MID02_RS01975 (MID02_01975)	-	383439..384803 (-)	1365	WP_014304341.1	aspartate kinase	-
MID02_RS01980 (MID02_01980)	ceuB	385218..386171 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
MID02_RS01985 (MID02_01985)	-	386161..387108 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
MID02_RS01990 (MID02_01990)	-	387102..387860 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=657005 MID02_RS01960 WP_003156336.1 381848..382996(+) (rapC) [Bacillus velezensis strain SF327]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=657005 MID02_RS01960 WP_003156336.1 381848..382996(+) (rapC) [Bacillus velezensis strain SF327]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568