Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   L6178_RS06495 Genome accession   NZ_CP091767
Coordinates   1239635..1239958 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus anthracis strain ChBA30D     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234635..1244958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6178_RS06470 (L6178_06470) - 1234942..1236228 (+) 1287 WP_000247037.1 D-alanyl-D-alanine carboxypeptidase family protein -
  L6178_RS06475 (L6178_06475) sipW 1236423..1236992 (+) 570 WP_000767813.1 signal peptidase I SipW -
  L6178_RS06480 (L6178_06480) - 1237055..1237642 (+) 588 WP_000172839.1 CalY family protein -
  L6178_RS06485 (L6178_06485) - 1237804..1238568 (+) 765 WP_000917476.1 DUF4047 domain-containing protein -
  L6178_RS06490 (L6178_06490) calY 1238966..1239559 (+) 594 WP_000053732.1 biofilm matrix protein CalY -
  L6178_RS06495 (L6178_06495) sinR 1239635..1239958 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  L6178_RS06500 (L6178_06500) - 1240038..1240172 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  L6178_RS06505 (L6178_06505) inhA1 1240516..1242903 (+) 2388 WP_001035927.1 M6 family metalloprotease immune inhibitor InhA1 -
  L6178_RS06510 (L6178_06510) - 1243075..1244442 (+) 1368 WP_000116806.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=653488 L6178_RS06495 WP_000578878.1 1239635..1239958(-) (sinR) [Bacillus anthracis strain ChBA30D]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=653488 L6178_RS06495 WP_000578878.1 1239635..1239958(-) (sinR) [Bacillus anthracis strain ChBA30D]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692