Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHT21_RS35870 Genome accession   NZ_CP108054
Coordinates   7942894..7943925 (-) Length   343 a.a.
NCBI ID   WP_328772427.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7937894..7948925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - cytR 7942894..7943925 (-) 1032 - - Regulator

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36634.53 Da        Isoelectric Point: 5.3878

>NTDB_id=652219 OHT21_RS35870 WP_328772427.1 7942894..7943925(-) (cytR) [Streptomyces sp. NBC_00286]
MATMVDVARSAGVSVATVSHVLNNTRTVRPATRQAVLDAIDELGYTPNSLARSLVTARTRSIGLAVSAISNPYFTEILQG
VEAGALEQGYSLLIADPHDDPAHERKVVQLLHERRVDGMIVAPSVQPDELIGYLGRHDVPTVFLDRLVDEAATPGFTFDQ
VCAENTEPVRQLVTHLAELGHKRIGLVGGLPGLSTTSERISGYRHGLAYAGLPYDERLVVCGSSEAEGAERATGDLLSLP
APPTALVTANNTMTIGALRALREGGLSVPDDVALCCFDDFSWADLFSPRLTAISQPSKEIGAQAVRLLLERLASPDRPGR
TLRLPSSFVHRTSCGCPEKGPDS

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=652219 OHT21_RS35870 WP_328772427.1 7942894..7943925(-) (cytR) [Streptomyces sp. NBC_00286]
ATGGCGACCATGGTCGACGTGGCCCGCAGCGCGGGCGTATCCGTCGCGACGGTCTCGCACGTCCTCAACAACACCCGCAC
CGTGCGGCCGGCCACCCGCCAAGCAGTGCTCGACGCCATCGACGAGCTCGGCTACACGCCCAACTCGCTGGCGAGATCCC
TGGTCACGGCGCGCACCCGGTCCATCGGGCTCGCGGTGTCGGCGATCAGCAATCCGTACTTCACGGAGATCCTTCAGGGC
GTCGAGGCCGGGGCGCTGGAGCAGGGGTACAGCCTGCTGATCGCGGACCCGCACGACGATCCGGCGCACGAGCGCAAGGT
GGTCCAACTGCTGCACGAGCGGCGGGTGGACGGCATGATCGTGGCGCCGTCGGTGCAGCCGGACGAGCTCATCGGCTACC
TCGGGCGGCATGACGTACCGACGGTGTTCCTGGACCGGCTGGTCGACGAGGCTGCGACGCCCGGCTTCACGTTCGACCAG
GTCTGCGCGGAGAACACCGAGCCCGTCAGGCAGCTGGTCACCCACCTCGCCGAGCTGGGCCACAAGAGGATCGGTCTGGT
CGGCGGCCTGCCGGGGCTCAGCACCACGAGCGAGCGGATCTCGGGGTACCGGCACGGGCTCGCGTACGCGGGGCTCCCGT
ACGACGAGCGTCTCGTGGTCTGTGGCAGCTCGGAAGCAGAGGGCGCCGAACGCGCGACCGGGGACCTACTGTCCCTCCCG
GCGCCGCCGACGGCACTCGTCACCGCGAACAACACCATGACCATCGGCGCACTGCGAGCCCTGCGTGAGGGGGGTCTGTC
CGTGCCCGACGACGTGGCCCTGTGCTGTTTCGACGACTTCTCCTGGGCGGACCTCTTCTCGCCCCGGCTCACCGCGATCT
CCCAGCCCAGCAAGGAGATCGGGGCCCAGGCCGTACGGCTGCTCCTGGAGCGGCTGGCCTCCCCCGACCGTCCGGGCCGT
ACGCTCCGGCTGCCCTCCTCCTTCGTTCACCGCACCTCGTGCGGCTGCCCCGAGAAAGGACCCGACTCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.471

99.125

0.362