Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT21_RS32255 Genome accession   NZ_CP108054
Coordinates   7103531..7105264 (-) Length   577 a.a.
NCBI ID   WP_328771792.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7098531..7110264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rcrP 7103531..7105264 (-) 1734 - - Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62978.31 Da        Isoelectric Point: 7.0901

>NTDB_id=652209 OHT21_RS32255 WP_328771792.1 7103531..7105264(-) (rcrP) [Streptomyces sp. NBC_00286]
MLIRLLRAHLRPYKKAIALLVLLQFLQTCATLYLPTLNADIIDDGVVKGDTGYILTFGALMIGISLVQVVCNIGAVYYGA
RTASAVGRDIRAGVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVQLSGV
LVAVVPVLGISVTLIVRRLRPLFRTMQERLDNVNRVLREQITGNRVIRAFVRDTYEEERFRKANVELTEVSLGTGRILAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PKAPVRELRRHGHLEVRGAGFRYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TLEPRLLARTVGLVPQKPYLFAGTVATNLRYGNPAATDEELWHALEVAQAKDFVQRLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALARETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ECYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=652209 OHT21_RS32255 WP_328771792.1 7103531..7105264(-) (rcrP) [Streptomyces sp. NBC_00286]
GTGCTCATACGACTCCTGCGTGCCCATCTCAGGCCGTACAAGAAGGCCATCGCCTTACTGGTGCTGCTGCAGTTCCTCCA
GACCTGCGCCACCCTCTATCTGCCCACCCTGAACGCGGACATCATCGACGACGGTGTGGTGAAGGGGGACACGGGCTACA
TCCTGACGTTCGGCGCGTTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAATATCGGGGCCGTCTATTACGGGGCT
CGTACGGCCTCGGCGGTCGGCCGGGACATCCGGGCCGGCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTCGG
CCGCTTCGGGGCGCCGTCGCTGATCACCCGCACCACGAACGATGTGCAGCAGGTGCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTCATGGCGCTCGGTCTGGACGTACAGCTGTCCGGAGTG
CTCGTCGCCGTCGTGCCTGTCCTCGGTATCAGCGTGACGTTGATCGTGCGGCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGAGCGGCTCGACAACGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACA
CCTACGAGGAGGAGCGCTTCCGTAAGGCCAACGTCGAGCTCACCGAGGTGTCGCTGGGCACCGGGCGGATTCTGGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACGTCTCGTCGATCGCGGTGGTGTGGTTCGGTGCGCACCGTATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTCTGCGCCGAGCGCATCCAAGAGGTCCTGGACACGGAGAGCAGTGTCGTGCCT
CCGAAGGCGCCTGTACGGGAACTGCGGCGGCACGGTCATCTGGAGGTGCGCGGGGCCGGTTTCCGTTACCCCGGCGCCGA
GGAGCCGGTGCTGAAGTCCATCGACCTGGTGGCGCGGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGCA
AGTCGACGCTTCTCGGGCTGGTCCCGCGGCTTTTCGACGCCACGGACGGTGAGGTCCTCGTCGACGGCGTGGACGTACGG
ACCCTTGAACCGCGGCTGCTGGCGCGGACCGTGGGCCTCGTACCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCCAC
GAACCTGCGGTACGGGAATCCGGCCGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGCAGCGGTTGGAGAACGGGCTCGACTCCCCCATCGCGCAGGGCGGCACGAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGAACCCTCGTACAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCCCTGCGTACGGCGCTGGCGCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCGCAACGCGTGTCGACCATCC
GTGACGCCGACCGGATCGTCGTACTCGACGAGGGGCGGGTCGTGGGGACGGGCCGCCACCACGAGCTGATGGCGGACAAC
GAGTGCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.726

100

0.39