Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   L3475_RS08715 Genome accession   NZ_CP091451
Coordinates   1706518..1707444 (-) Length   308 a.a.
NCBI ID   WP_000103702.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3238/09     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701518..1712444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3475_RS08695 (L3475_08630) - 1702706..1704052 (+) 1347 WP_001839294.1 IS1380-like element ISSpn5 family transposase -
  L3475_RS08700 (L3475_08635) - 1704245..1704430 (+) 186 Protein_1725 transposase -
  L3475_RS08705 (L3475_08640) amiF 1704505..1705431 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  L3475_RS08710 (L3475_08645) amiE 1705442..1706509 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  L3475_RS08715 (L3475_08650) amiD 1706518..1707444 (-) 927 WP_000103702.1 oligopeptide ABC transporter permease OppC Regulator
  L3475_RS08720 (L3475_08655) amiC 1707444..1708940 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  L3475_RS08725 (L3475_08660) amiA3 1709007..1710986 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34620.73 Da        Isoelectric Point: 9.7939

>NTDB_id=651340 L3475_RS08715 WP_000103702.1 1706518..1707444(-) (amiD) [Streptococcus pneumoniae strain 3238/09]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINVVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=651340 L3475_RS08715 WP_000103702.1 1706518..1707444(-) (amiD) [Streptococcus pneumoniae strain 3238/09]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACGTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815